Strain Fitness in Sinorhizobium meliloti 1021 around SMc02550

Experiment: LB, pH6

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc02551 and SMc02550 are separated by 50 nucleotidesSMc02550 and SMc02549 overlap by 4 nucleotidesSMc02549 and SMc02548 overlap by 4 nucleotidesSMc02548 and SMc02547 overlap by 4 nucleotides SMc02551: SMc02551 - cysteinyl-tRNA synthetase, at 1,209,209 to 1,210,609 SMc02551 SMc02550: SMc02550 - hypothetical protein, at 1,210,660 to 1,211,142 SMc02550 SMc02549: SMc02549 - hypothetical protein, at 1,211,139 to 1,211,618 SMc02549 SMc02548: SMc02548 - hypothetical protein, at 1,211,615 to 1,212,115 SMc02548 SMc02547: SMc02547 - proline iminopeptidase, at 1,212,112 to 1,213,074 SMc02547 Position (kb) 1210 1211 1212Strain fitness (log2 ratio) -2 -1 0 1 2at 1210.607 kb on + strandat 1210.678 kb on - strandat 1210.678 kb on - strandat 1210.803 kb on - strand, within SMc02550at 1210.821 kb on - strand, within SMc02550at 1210.907 kb on - strand, within SMc02550at 1211.005 kb on + strandat 1211.005 kb on + strand, within SMc02550at 1211.005 kb on + strand, within SMc02550at 1211.006 kb on - strand, within SMc02550at 1211.089 kb on + strand, within SMc02550at 1211.090 kb on - strand, within SMc02550at 1211.322 kb on + strand, within SMc02549at 1211.340 kb on - strand, within SMc02549at 1211.344 kb on + strand, within SMc02549at 1211.385 kb on + strand, within SMc02549at 1211.385 kb on + strand, within SMc02549at 1211.385 kb on + strand, within SMc02549at 1211.385 kb on + strand, within SMc02549at 1211.385 kb on + strand, within SMc02549at 1211.467 kb on - strand, within SMc02549at 1211.467 kb on - strand, within SMc02549at 1211.533 kb on - strand, within SMc02549at 1211.695 kb on + strand, within SMc02548at 1211.695 kb on + strand, within SMc02548at 1211.695 kb on + strand, within SMc02548at 1211.695 kb on + strand, within SMc02548at 1211.696 kb on - strand, within SMc02548at 1211.696 kb on - strand, within SMc02548at 1211.735 kb on + strand, within SMc02548at 1211.736 kb on - strand, within SMc02548at 1211.801 kb on + strand, within SMc02548at 1211.861 kb on + strand, within SMc02548at 1211.861 kb on + strand, within SMc02548at 1211.936 kb on + strand, within SMc02548at 1212.042 kb on + strand, within SMc02548at 1212.042 kb on + strand, within SMc02548at 1212.042 kb on + strand, within SMc02548at 1212.043 kb on - strand, within SMc02548at 1212.108 kb on + strandat 1212.129 kb on + strandat 1212.130 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB, pH6
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1,210,607 + -0.7
1,210,678 - -0.8
1,210,678 - +0.2
1,210,803 - SMc02550 0.30 +2.4
1,210,821 - SMc02550 0.33 -1.1
1,210,907 - SMc02550 0.51 -1.7
1,211,005 + +2.2
1,211,005 + SMc02550 0.71 -0.6
1,211,005 + SMc02550 0.71 -0.1
1,211,006 - SMc02550 0.72 -2.4
1,211,089 + SMc02550 0.89 -1.5
1,211,090 - SMc02550 0.89 -0.5
1,211,322 + SMc02549 0.38 -0.4
1,211,340 - SMc02549 0.42 -1.8
1,211,344 + SMc02549 0.43 -0.2
1,211,385 + SMc02549 0.51 +1.8
1,211,385 + SMc02549 0.51 -0.2
1,211,385 + SMc02549 0.51 -0.3
1,211,385 + SMc02549 0.51 +1.2
1,211,385 + SMc02549 0.51 -0.3
1,211,467 - SMc02549 0.68 -0.5
1,211,467 - SMc02549 0.68 -1.9
1,211,533 - SMc02549 0.82 -0.0
1,211,695 + SMc02548 0.16 -0.4
1,211,695 + SMc02548 0.16 -2.3
1,211,695 + SMc02548 0.16 +0.1
1,211,695 + SMc02548 0.16 -0.7
1,211,696 - SMc02548 0.16 -0.1
1,211,696 - SMc02548 0.16 -0.9
1,211,735 + SMc02548 0.24 -1.3
1,211,736 - SMc02548 0.24 -1.2
1,211,801 + SMc02548 0.37 -0.1
1,211,861 + SMc02548 0.49 -0.6
1,211,861 + SMc02548 0.49 -0.7
1,211,936 + SMc02548 0.64 +0.3
1,212,042 + SMc02548 0.85 +1.3
1,212,042 + SMc02548 0.85 -0.2
1,212,042 + SMc02548 0.85 -0.2
1,212,043 - SMc02548 0.85 -0.3
1,212,108 + +0.0
1,212,129 + -0.7
1,212,130 - +0.3

Or see this region's nucleotide sequence