Experiment: LB, pH6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02551 and SMc02550 are separated by 50 nucleotides SMc02550 and SMc02549 overlap by 4 nucleotides SMc02549 and SMc02548 overlap by 4 nucleotides SMc02548 and SMc02547 overlap by 4 nucleotides
SMc02551: SMc02551 - cysteinyl-tRNA synthetase, at 1,209,209 to 1,210,609
SMc02551
SMc02550: SMc02550 - hypothetical protein, at 1,210,660 to 1,211,142
SMc02550
SMc02549: SMc02549 - hypothetical protein, at 1,211,139 to 1,211,618
SMc02549
SMc02548: SMc02548 - hypothetical protein, at 1,211,615 to 1,212,115
SMc02548
SMc02547: SMc02547 - proline iminopeptidase, at 1,212,112 to 1,213,074
SMc02547
Position (kb)
1210
1211
1212 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1210.607 kb on + strand at 1210.678 kb on - strand at 1210.678 kb on - strand at 1210.803 kb on - strand, within SMc02550 at 1210.821 kb on - strand, within SMc02550 at 1210.907 kb on - strand, within SMc02550 at 1211.005 kb on + strand at 1211.005 kb on + strand, within SMc02550 at 1211.005 kb on + strand, within SMc02550 at 1211.006 kb on - strand, within SMc02550 at 1211.089 kb on + strand, within SMc02550 at 1211.090 kb on - strand, within SMc02550 at 1211.322 kb on + strand, within SMc02549 at 1211.340 kb on - strand, within SMc02549 at 1211.344 kb on + strand, within SMc02549 at 1211.385 kb on + strand, within SMc02549 at 1211.385 kb on + strand, within SMc02549 at 1211.385 kb on + strand, within SMc02549 at 1211.385 kb on + strand, within SMc02549 at 1211.385 kb on + strand, within SMc02549 at 1211.467 kb on - strand, within SMc02549 at 1211.467 kb on - strand, within SMc02549 at 1211.533 kb on - strand, within SMc02549 at 1211.695 kb on + strand, within SMc02548 at 1211.695 kb on + strand, within SMc02548 at 1211.695 kb on + strand, within SMc02548 at 1211.695 kb on + strand, within SMc02548 at 1211.696 kb on - strand, within SMc02548 at 1211.696 kb on - strand, within SMc02548 at 1211.735 kb on + strand, within SMc02548 at 1211.736 kb on - strand, within SMc02548 at 1211.801 kb on + strand, within SMc02548 at 1211.861 kb on + strand, within SMc02548 at 1211.861 kb on + strand, within SMc02548 at 1211.936 kb on + strand, within SMc02548 at 1212.042 kb on + strand, within SMc02548 at 1212.042 kb on + strand, within SMc02548 at 1212.042 kb on + strand, within SMc02548 at 1212.043 kb on - strand, within SMc02548 at 1212.108 kb on + strand at 1212.129 kb on + strand at 1212.130 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB, pH6 remove 1,210,607 + -0.7 1,210,678 - -0.8 1,210,678 - +0.2 1,210,803 - SMc02550 0.30 +2.4 1,210,821 - SMc02550 0.33 -1.1 1,210,907 - SMc02550 0.51 -1.7 1,211,005 + +2.2 1,211,005 + SMc02550 0.71 -0.6 1,211,005 + SMc02550 0.71 -0.1 1,211,006 - SMc02550 0.72 -2.4 1,211,089 + SMc02550 0.89 -1.5 1,211,090 - SMc02550 0.89 -0.5 1,211,322 + SMc02549 0.38 -0.4 1,211,340 - SMc02549 0.42 -1.8 1,211,344 + SMc02549 0.43 -0.2 1,211,385 + SMc02549 0.51 +1.8 1,211,385 + SMc02549 0.51 -0.2 1,211,385 + SMc02549 0.51 -0.3 1,211,385 + SMc02549 0.51 +1.2 1,211,385 + SMc02549 0.51 -0.3 1,211,467 - SMc02549 0.68 -0.5 1,211,467 - SMc02549 0.68 -1.9 1,211,533 - SMc02549 0.82 -0.0 1,211,695 + SMc02548 0.16 -0.4 1,211,695 + SMc02548 0.16 -2.3 1,211,695 + SMc02548 0.16 +0.1 1,211,695 + SMc02548 0.16 -0.7 1,211,696 - SMc02548 0.16 -0.1 1,211,696 - SMc02548 0.16 -0.9 1,211,735 + SMc02548 0.24 -1.3 1,211,736 - SMc02548 0.24 -1.2 1,211,801 + SMc02548 0.37 -0.1 1,211,861 + SMc02548 0.49 -0.6 1,211,861 + SMc02548 0.49 -0.7 1,211,936 + SMc02548 0.64 +0.3 1,212,042 + SMc02548 0.85 +1.3 1,212,042 + SMc02548 0.85 -0.2 1,212,042 + SMc02548 0.85 -0.2 1,212,043 - SMc02548 0.85 -0.3 1,212,108 + +0.0 1,212,129 + -0.7 1,212,130 - +0.3
Or see this region's nucleotide sequence