Strain Fitness in Sinorhizobium meliloti 1021 around SMc02362

Experiment: LB, pH6

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc02361 and SMc02362 overlap by 4 nucleotidesSMc02362 and SMc02363 overlap by 4 nucleotides SMc02361: SMc02361 - cytochrome C-type biogenesis transmembrane protein, at 1,107,820 to 1,108,965 SMc02361 SMc02362: SMc02362 - cytochrome c-type biogenesis protein CcmE, at 1,108,962 to 1,109,414 SMc02362 SMc02363: SMc02363 - cytochrome C-type biogenesis transmembrane protein, at 1,109,411 to 1,111,441 SMc02363 Position (kb) 1108 1109 1110Strain fitness (log2 ratio) -2 -1 0 1 2at 1108.309 kb on + strand, within SMc02361at 1108.310 kb on - strand, within SMc02361at 1108.349 kb on - strand, within SMc02361at 1108.400 kb on - strand, within SMc02361at 1108.438 kb on - strand, within SMc02361at 1108.438 kb on - strand, within SMc02361at 1108.692 kb on + strand, within SMc02361at 1108.693 kb on - strand, within SMc02361at 1108.822 kb on + strand, within SMc02361at 1108.822 kb on + strand, within SMc02361at 1108.822 kb on + strand, within SMc02361at 1109.070 kb on + strand, within SMc02362at 1109.220 kb on + strand, within SMc02362at 1109.340 kb on + strand, within SMc02362at 1109.340 kb on + strand, within SMc02362

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Per-strain Table

Position Strand Gene LocusTag Fraction LB, pH6
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1,108,309 + SMc02361 0.43 -2.1
1,108,310 - SMc02361 0.43 +0.4
1,108,349 - SMc02361 0.46 -0.1
1,108,400 - SMc02361 0.51 -0.6
1,108,438 - SMc02361 0.54 -0.5
1,108,438 - SMc02361 0.54 -0.5
1,108,692 + SMc02361 0.76 -0.2
1,108,693 - SMc02361 0.76 -0.9
1,108,822 + SMc02361 0.87 +1.9
1,108,822 + SMc02361 0.87 +0.5
1,108,822 + SMc02361 0.87 +2.1
1,109,070 + SMc02362 0.24 -2.0
1,109,220 + SMc02362 0.57 -2.2
1,109,340 + SMc02362 0.83 -1.2
1,109,340 + SMc02362 0.83 -2.2

Or see this region's nucleotide sequence