Experiment: LB, pH6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02279 and SMc02280 are separated by 52 nucleotides SMc02280 and SMc02281 overlap by 4 nucleotides SMc02281 and SMc02282 are separated by 14 nucleotides
SMc02279: SMc02279 - signal peptide protein, at 652,921 to 653,298
SMc02279
SMc02280: SMc02280 - hypothetical protein, at 653,351 to 653,620
SMc02280
SMc02281: SMc02281 - hypothetical protein, at 653,617 to 655,062
SMc02281
SMc02282: SMc02282 - copper-containing oxidoreductase, at 655,077 to 656,426
SMc02282
Position (kb) 653
654
655
656 Strain fitness (log2 ratio) -2
-1
0
1
2 at 652.638 kb on - strand at 652.643 kb on + strand at 652.644 kb on - strand at 652.644 kb on - strand at 652.644 kb on - strand at 652.687 kb on + strand at 652.790 kb on - strand at 652.790 kb on - strand at 652.797 kb on - strand at 652.910 kb on - strand at 652.996 kb on + strand, within SMc02279 at 652.997 kb on - strand, within SMc02279 at 652.997 kb on - strand, within SMc02279 at 653.202 kb on + strand, within SMc02279 at 653.300 kb on + strand at 653.386 kb on + strand, within SMc02280 at 653.521 kb on + strand, within SMc02280 at 653.522 kb on - strand, within SMc02280 at 653.522 kb on - strand, within SMc02280 at 653.973 kb on + strand, within SMc02281 at 653.974 kb on - strand, within SMc02281 at 653.998 kb on - strand, within SMc02281 at 654.037 kb on - strand, within SMc02281 at 654.298 kb on + strand, within SMc02281 at 654.298 kb on + strand, within SMc02281 at 654.532 kb on + strand, within SMc02281 at 654.533 kb on - strand, within SMc02281 at 654.556 kb on + strand, within SMc02281 at 654.556 kb on + strand, within SMc02281 at 654.557 kb on - strand, within SMc02281 at 654.714 kb on + strand, within SMc02281 at 654.715 kb on - strand, within SMc02281 at 654.817 kb on + strand, within SMc02281 at 654.874 kb on + strand, within SMc02281 at 654.874 kb on + strand, within SMc02281 at 654.875 kb on - strand, within SMc02281 at 655.003 kb on + strand at 655.097 kb on - strand at 655.097 kb on - strand at 655.151 kb on + strand at 655.542 kb on + strand, within SMc02282 at 655.578 kb on + strand, within SMc02282 at 655.578 kb on + strand, within SMc02282 at 655.578 kb on + strand, within SMc02282 at 655.578 kb on + strand, within SMc02282 at 655.702 kb on - strand, within SMc02282 at 655.722 kb on + strand, within SMc02282 at 655.722 kb on + strand, within SMc02282 at 655.723 kb on - strand, within SMc02282 at 655.723 kb on - strand, within SMc02282 at 655.723 kb on - strand, within SMc02282 at 655.723 kb on - strand, within SMc02282 at 655.758 kb on - strand, within SMc02282 at 655.758 kb on - strand, within SMc02282 at 655.781 kb on - strand, within SMc02282 at 655.980 kb on + strand, within SMc02282 at 655.998 kb on + strand, within SMc02282 at 656.028 kb on - strand, within SMc02282 at 656.028 kb on - strand, within SMc02282 at 656.028 kb on - strand, within SMc02282 at 656.028 kb on - strand, within SMc02282
Per-strain Table
Position Strand Gene LocusTag Fraction LB, pH6 remove 652,638 - -1.6 652,643 + +0.7 652,644 - -0.8 652,644 - +2.6 652,644 - +1.2 652,687 + +0.1 652,790 - +2.0 652,790 - -0.6 652,797 - -0.6 652,910 - -0.9 652,996 + SMc02279 0.20 +0.6 652,997 - SMc02279 0.20 +0.4 652,997 - SMc02279 0.20 -0.3 653,202 + SMc02279 0.74 +0.0 653,300 + +1.2 653,386 + SMc02280 0.13 -0.1 653,521 + SMc02280 0.63 +1.4 653,522 - SMc02280 0.63 -2.4 653,522 - SMc02280 0.63 -1.2 653,973 + SMc02281 0.25 -0.5 653,974 - SMc02281 0.25 +1.0 653,998 - SMc02281 0.26 -0.2 654,037 - SMc02281 0.29 -1.8 654,298 + SMc02281 0.47 -1.6 654,298 + SMc02281 0.47 -1.9 654,532 + SMc02281 0.63 -0.8 654,533 - SMc02281 0.63 -0.2 654,556 + SMc02281 0.65 +1.4 654,556 + SMc02281 0.65 -0.9 654,557 - SMc02281 0.65 -1.5 654,714 + SMc02281 0.76 +0.0 654,715 - SMc02281 0.76 +0.2 654,817 + SMc02281 0.83 -0.3 654,874 + SMc02281 0.87 -0.1 654,874 + SMc02281 0.87 -0.8 654,875 - SMc02281 0.87 -0.0 655,003 + +0.4 655,097 - +0.9 655,097 - -0.5 655,151 + -1.4 655,542 + SMc02282 0.34 -0.2 655,578 + SMc02282 0.37 +0.3 655,578 + SMc02282 0.37 +0.2 655,578 + SMc02282 0.37 -0.8 655,578 + SMc02282 0.37 -2.1 655,702 - SMc02282 0.46 -0.4 655,722 + SMc02282 0.48 -0.3 655,722 + SMc02282 0.48 -1.7 655,723 - SMc02282 0.48 +0.5 655,723 - SMc02282 0.48 -0.7 655,723 - SMc02282 0.48 -0.9 655,723 - SMc02282 0.48 +0.8 655,758 - SMc02282 0.50 -0.3 655,758 - SMc02282 0.50 -0.9 655,781 - SMc02282 0.52 +0.3 655,980 + SMc02282 0.67 +1.6 655,998 + SMc02282 0.68 +1.8 656,028 - SMc02282 0.70 -0.7 656,028 - SMc02282 0.70 -1.2 656,028 - SMc02282 0.70 +0.7 656,028 - SMc02282 0.70 -0.0
Or see this region's nucleotide sequence