Experiment: LB, pH6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02136 and SMc02135 are separated by 16 nucleotides SMc02135 and SMc02134 are separated by 189 nucleotides SMc02134 and SMc02217 are separated by 35 nucleotides
SMc02136: SMc02136 - Hsp33-like chaperonin, at 576,645 to 577,637
SMc02136
SMc02135: SMc02135 - ApaG protein, at 577,654 to 578,046
SMc02135
SMc02134: SMc02134 - hypothetical protein, at 578,236 to 578,847
SMc02134
SMc02217: SMc02217 - O-succinylhomoserine sulfhydrylase, at 578,883 to 580,067
SMc02217
Position (kb) 577
578
579 Strain fitness (log2 ratio) -2
-1
0
1
2 at 576.790 kb on - strand, within SMc02136 at 576.790 kb on - strand, within SMc02136 at 576.960 kb on + strand, within SMc02136 at 576.965 kb on + strand, within SMc02136 at 576.965 kb on + strand, within SMc02136 at 577.459 kb on - strand, within SMc02136 at 577.476 kb on + strand, within SMc02136 at 577.477 kb on - strand, within SMc02136 at 577.477 kb on - strand, within SMc02136 at 577.635 kb on + strand at 577.660 kb on - strand at 577.660 kb on - strand at 577.746 kb on - strand, within SMc02135 at 577.773 kb on + strand, within SMc02135 at 577.773 kb on + strand, within SMc02135 at 577.774 kb on - strand, within SMc02135 at 577.797 kb on - strand, within SMc02135 at 577.802 kb on + strand, within SMc02135 at 577.802 kb on + strand at 577.803 kb on - strand, within SMc02135 at 577.803 kb on - strand, within SMc02135 at 577.896 kb on - strand, within SMc02135 at 577.936 kb on + strand, within SMc02135 at 577.937 kb on - strand, within SMc02135 at 577.962 kb on - strand, within SMc02135 at 577.962 kb on - strand, within SMc02135 at 577.997 kb on + strand, within SMc02135 at 578.000 kb on + strand, within SMc02135 at 578.001 kb on - strand, within SMc02135 at 578.001 kb on - strand, within SMc02135 at 578.077 kb on + strand at 578.082 kb on + strand at 578.090 kb on + strand at 578.091 kb on - strand at 578.221 kb on + strand at 578.387 kb on - strand, within SMc02134 at 578.593 kb on + strand, within SMc02134 at 578.593 kb on + strand, within SMc02134 at 578.593 kb on + strand, within SMc02134 at 578.593 kb on + strand, within SMc02134 at 578.594 kb on - strand, within SMc02134 at 578.594 kb on - strand, within SMc02134 at 578.594 kb on - strand, within SMc02134 at 578.621 kb on - strand, within SMc02134 at 578.680 kb on + strand, within SMc02134 at 578.681 kb on - strand, within SMc02134 at 578.763 kb on - strand, within SMc02134 at 578.794 kb on + strand at 578.795 kb on - strand at 578.795 kb on - strand at 578.892 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB, pH6 remove 576,790 - SMc02136 0.15 +0.7 576,790 - SMc02136 0.15 +0.4 576,960 + SMc02136 0.32 -2.0 576,965 + SMc02136 0.32 -0.6 576,965 + SMc02136 0.32 -0.3 577,459 - SMc02136 0.82 +0.5 577,476 + SMc02136 0.84 -2.0 577,477 - SMc02136 0.84 +0.8 577,477 - SMc02136 0.84 -0.2 577,635 + +0.5 577,660 - -2.5 577,660 - -0.8 577,746 - SMc02135 0.23 -2.6 577,773 + SMc02135 0.30 -1.9 577,773 + SMc02135 0.30 -0.3 577,774 - SMc02135 0.31 -0.7 577,797 - SMc02135 0.36 +0.3 577,802 + SMc02135 0.38 -0.7 577,802 + +2.0 577,803 - SMc02135 0.38 -0.1 577,803 - SMc02135 0.38 -0.6 577,896 - SMc02135 0.62 -1.5 577,936 + SMc02135 0.72 +0.7 577,937 - SMc02135 0.72 +1.3 577,962 - SMc02135 0.78 -0.9 577,962 - SMc02135 0.78 -0.5 577,997 + SMc02135 0.87 -0.1 578,000 + SMc02135 0.88 +0.0 578,001 - SMc02135 0.88 -1.7 578,001 - SMc02135 0.88 -0.4 578,077 + +0.4 578,082 + -0.7 578,090 + -0.7 578,091 - +0.0 578,221 + +0.0 578,387 - SMc02134 0.25 -0.5 578,593 + SMc02134 0.58 +0.9 578,593 + SMc02134 0.58 +1.0 578,593 + SMc02134 0.58 -2.5 578,593 + SMc02134 0.58 +0.4 578,594 - SMc02134 0.58 -1.6 578,594 - SMc02134 0.58 +1.1 578,594 - SMc02134 0.58 -0.4 578,621 - SMc02134 0.63 -0.8 578,680 + SMc02134 0.73 +0.4 578,681 - SMc02134 0.73 +0.2 578,763 - SMc02134 0.86 +0.8 578,794 + -0.0 578,795 - -0.4 578,795 - -1.3 578,892 + -0.8
Or see this region's nucleotide sequence