Strain Fitness in Sinorhizobium meliloti 1021 around SMc01206

Experiment: LB, pH6

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSMc01207 and SMc01206 are separated by 0 nucleotidesSMc01206 and SMc01205 are separated by 448 nucleotides SMc01207: SMc01207 - S-adenosylmethionine--tRNA ribosyltransferase-isomerase, at 1,721,115 to 1,722,197 SMc01207 SMc01206: SMc01206 - queuine tRNA-ribosyltransferase, at 1,722,198 to 1,723,328 SMc01206 SMc01205: SMc01205 - amino-acid-binding periplasmic signal peptide protein, at 1,723,777 to 1,724,532 SMc01205 Position (kb) 1722 1723 1724Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1721.350 kb on + strand, within SMc01207at 1721.351 kb on - strand, within SMc01207at 1721.351 kb on - strand, within SMc01207at 1721.351 kb on - strand, within SMc01207at 1721.351 kb on - strand, within SMc01207at 1722.196 kb on - strandat 1722.381 kb on - strand, within SMc01206at 1722.960 kb on - strand, within SMc01206at 1723.216 kb on - strandat 1723.387 kb on + strandat 1723.387 kb on + strandat 1723.388 kb on - strandat 1723.388 kb on - strandat 1723.397 kb on - strandat 1723.397 kb on - strandat 1723.632 kb on + strandat 1723.689 kb on - strandat 1723.790 kb on + strandat 1723.791 kb on - strandat 1723.795 kb on - strandat 1723.995 kb on - strand, within SMc01205at 1724.122 kb on + strand, within SMc01205at 1724.125 kb on + strand, within SMc01205at 1724.125 kb on + strand, within SMc01205at 1724.126 kb on - strand, within SMc01205at 1724.126 kb on - strand, within SMc01205at 1724.134 kb on + strand, within SMc01205at 1724.135 kb on - strand, within SMc01205at 1724.140 kb on + strand, within SMc01205at 1724.190 kb on + strand, within SMc01205at 1724.190 kb on + strand, within SMc01205at 1724.191 kb on - strand, within SMc01205at 1724.281 kb on + strand, within SMc01205at 1724.281 kb on + strand, within SMc01205at 1724.282 kb on - strand, within SMc01205

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB, pH6
remove
1,721,350 + SMc01207 0.22 -0.5
1,721,351 - SMc01207 0.22 -2.6
1,721,351 - SMc01207 0.22 -0.5
1,721,351 - SMc01207 0.22 -0.8
1,721,351 - SMc01207 0.22 -1.6
1,722,196 - -1.4
1,722,381 - SMc01206 0.16 -1.3
1,722,960 - SMc01206 0.67 -3.7
1,723,216 - +0.6
1,723,387 + +0.6
1,723,387 + -0.2
1,723,388 - -1.2
1,723,388 - -0.3
1,723,397 - -1.3
1,723,397 - -0.4
1,723,632 + +0.8
1,723,689 - -0.1
1,723,790 + +2.1
1,723,791 - -0.4
1,723,795 - +0.2
1,723,995 - SMc01205 0.29 -0.8
1,724,122 + SMc01205 0.46 -2.1
1,724,125 + SMc01205 0.46 -0.3
1,724,125 + SMc01205 0.46 +0.5
1,724,126 - SMc01205 0.46 -0.4
1,724,126 - SMc01205 0.46 -0.5
1,724,134 + SMc01205 0.47 +0.0
1,724,135 - SMc01205 0.47 -2.5
1,724,140 + SMc01205 0.48 +1.0
1,724,190 + SMc01205 0.55 -0.1
1,724,190 + SMc01205 0.55 +0.6
1,724,191 - SMc01205 0.55 +1.6
1,724,281 + SMc01205 0.67 +1.1
1,724,281 + SMc01205 0.67 -1.2
1,724,282 - SMc01205 0.67 -0.9

Or see this region's nucleotide sequence