Strain Fitness in Sinorhizobium meliloti 1021 around SMc00656

Experiment: LB, pH6

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc00658 and SMc00657 are separated by 408 nucleotidesSMc00657 and SMc00656 are separated by 150 nucleotidesSMc00656 and SMc00655 are separated by 172 nucleotides SMc00658: SMc00658 - transcriptional regulator, at 2,919,147 to 2,919,890 SMc00658 SMc00657: SMc00657 - hypothetical protein, at 2,920,299 to 2,920,574 SMc00657 SMc00656: SMc00656 - hypothetical protein, at 2,920,725 to 2,921,006 SMc00656 SMc00655: SMc00655 - hypothetical protein, at 2,921,179 to 2,921,529 SMc00655 Position (kb) 2920 2921 2922Strain fitness (log2 ratio) -2 -1 0 1 2at 2919.803 kb on - strand, within SMc00658at 2920.039 kb on + strandat 2920.039 kb on + strandat 2920.690 kb on + strandat 2920.691 kb on - strandat 2920.803 kb on + strand, within SMc00656at 2920.804 kb on - strand, within SMc00656at 2921.007 kb on + strandat 2921.008 kb on - strandat 2921.092 kb on + strandat 2921.093 kb on - strandat 2921.157 kb on - strandat 2921.168 kb on + strandat 2921.169 kb on - strandat 2921.634 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB, pH6
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2,919,803 - SMc00658 0.88 -0.6
2,920,039 + +0.8
2,920,039 + -0.6
2,920,690 + -0.8
2,920,691 - -2.1
2,920,803 + SMc00656 0.28 -1.5
2,920,804 - SMc00656 0.28 +1.6
2,921,007 + +0.5
2,921,008 - +0.7
2,921,092 + +2.0
2,921,093 - +0.3
2,921,157 - -0.9
2,921,168 + +0.7
2,921,169 - -0.8
2,921,634 - -0.4

Or see this region's nucleotide sequence