Experiment: LB, pH6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00411 and SMc00412 are separated by 105 nucleotides SMc00412 and SMc00413 are separated by 7 nucleotides SMc00413 and SMc00414 are separated by 14 nucleotides SMc00414 and SMc00415 are separated by 203 nucleotides
SMc00411: SMc00411 - hypothetical protein, at 361,677 to 361,964
SMc00411
SMc00412: SMc00412 - orotidine 5'-phosphate decarboxylase, at 362,070 to 362,774
SMc00412
SMc00413: SMc00413 - hypothetical protein, at 362,782 to 363,363
SMc00413
SMc00414: SMc00414 - hypothetical protein, at 363,378 to 363,980
SMc00414
SMc00415: SMc00415 - DNA polymerase III subunit beta, at 364,184 to 365,302
SMc00415
Position (kb) 362
363
364 Strain fitness (log2 ratio) -2
-1
0
1
2 at 361.811 kb on + strand, within SMc00411 at 361.903 kb on + strand, within SMc00411 at 361.903 kb on + strand, within SMc00411 at 361.904 kb on - strand, within SMc00411 at 361.904 kb on - strand, within SMc00411 at 361.910 kb on + strand, within SMc00411 at 361.911 kb on - strand, within SMc00411 at 361.929 kb on + strand, within SMc00411 at 361.929 kb on + strand, within SMc00411 at 361.929 kb on + strand, within SMc00411 at 361.930 kb on - strand, within SMc00411 at 361.930 kb on - strand, within SMc00411 at 361.931 kb on + strand, within SMc00411 at 361.932 kb on - strand, within SMc00411 at 361.932 kb on - strand, within SMc00411 at 361.951 kb on + strand at 362.005 kb on + strand at 362.005 kb on + strand at 362.006 kb on - strand at 362.006 kb on - strand at 362.006 kb on - strand at 362.059 kb on + strand at 362.061 kb on + strand at 362.380 kb on + strand, within SMc00412 at 362.381 kb on - strand, within SMc00412 at 362.386 kb on + strand, within SMc00412 at 362.497 kb on + strand, within SMc00412 at 362.497 kb on + strand, within SMc00412 at 362.660 kb on - strand, within SMc00412 at 362.670 kb on - strand, within SMc00412 at 362.671 kb on + strand, within SMc00412 at 362.672 kb on - strand, within SMc00412 at 362.672 kb on - strand, within SMc00412 at 362.918 kb on - strand, within SMc00413 at 363.224 kb on - strand, within SMc00413 at 363.350 kb on + strand at 363.350 kb on + strand at 363.350 kb on + strand at 363.350 kb on + strand at 363.350 kb on + strand at 363.350 kb on + strand at 363.351 kb on - strand at 363.351 kb on - strand at 363.351 kb on - strand at 363.394 kb on + strand at 363.493 kb on + strand, within SMc00414 at 363.494 kb on - strand, within SMc00414 at 363.546 kb on + strand, within SMc00414 at 363.547 kb on - strand, within SMc00414 at 363.547 kb on - strand, within SMc00414 at 363.706 kb on + strand, within SMc00414 at 363.722 kb on - strand, within SMc00414 at 363.750 kb on + strand, within SMc00414 at 363.750 kb on + strand, within SMc00414 at 363.750 kb on + strand, within SMc00414 at 363.751 kb on - strand, within SMc00414 at 363.751 kb on - strand, within SMc00414 at 363.834 kb on + strand, within SMc00414 at 363.834 kb on + strand, within SMc00414 at 363.897 kb on - strand, within SMc00414 at 364.053 kb on + strand at 364.129 kb on + strand at 364.130 kb on - strand at 364.133 kb on + strand at 364.133 kb on + strand at 364.186 kb on - strand at 364.186 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB, pH6 remove 361,811 + SMc00411 0.47 -0.2 361,903 + SMc00411 0.78 +0.1 361,903 + SMc00411 0.78 +0.6 361,904 - SMc00411 0.79 -0.2 361,904 - SMc00411 0.79 -0.5 361,910 + SMc00411 0.81 -0.1 361,911 - SMc00411 0.81 -0.3 361,929 + SMc00411 0.88 -0.5 361,929 + SMc00411 0.88 +0.3 361,929 + SMc00411 0.88 -0.3 361,930 - SMc00411 0.88 +1.3 361,930 - SMc00411 0.88 -0.2 361,931 + SMc00411 0.88 -1.1 361,932 - SMc00411 0.89 -1.0 361,932 - SMc00411 0.89 -1.1 361,951 + -1.3 362,005 + +0.0 362,005 + +0.4 362,006 - -0.4 362,006 - -0.3 362,006 - +2.2 362,059 + +0.7 362,061 + -0.6 362,380 + SMc00412 0.44 -0.4 362,381 - SMc00412 0.44 -1.3 362,386 + SMc00412 0.45 +0.4 362,497 + SMc00412 0.61 -0.6 362,497 + SMc00412 0.61 -0.3 362,660 - SMc00412 0.84 +0.6 362,670 - SMc00412 0.85 -0.5 362,671 + SMc00412 0.85 +1.4 362,672 - SMc00412 0.85 -0.7 362,672 - SMc00412 0.85 -1.8 362,918 - SMc00413 0.23 -1.5 363,224 - SMc00413 0.76 -0.9 363,350 + -0.9 363,350 + +0.9 363,350 + -0.3 363,350 + -1.3 363,350 + +0.8 363,350 + +0.4 363,351 - -1.1 363,351 - -0.1 363,351 - +0.4 363,394 + -1.5 363,493 + SMc00414 0.19 -1.5 363,494 - SMc00414 0.19 -1.6 363,546 + SMc00414 0.28 +0.0 363,547 - SMc00414 0.28 -0.9 363,547 - SMc00414 0.28 -1.3 363,706 + SMc00414 0.54 -1.4 363,722 - SMc00414 0.57 -0.9 363,750 + SMc00414 0.62 -0.2 363,750 + SMc00414 0.62 -0.2 363,750 + SMc00414 0.62 +0.8 363,751 - SMc00414 0.62 -0.6 363,751 - SMc00414 0.62 -0.9 363,834 + SMc00414 0.76 -0.4 363,834 + SMc00414 0.76 -0.6 363,897 - SMc00414 0.86 -0.8 364,053 + -1.0 364,129 + -1.3 364,130 - +0.4 364,133 + -0.2 364,133 + -1.0 364,186 - -1.1 364,186 - +0.9
Or see this region's nucleotide sequence