Experiment: LB, pH6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00354 and SMc00355 are separated by 317 nucleotides SMc00355 and SMc00356 overlap by 4 nucleotides
SMc00354: SMc00354 - hypothetical protein, at 309,005 to 309,670
SMc00354
SMc00355: SMc00355 - hypothetical protein, at 309,988 to 311,040
SMc00355
SMc00356: SMc00356 - lysyl-tRNA synthetase, at 311,037 to 312,089
SMc00356
Position (kb) 309
310
311
312 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 309.822 kb on - strand at 309.862 kb on + strand at 309.877 kb on + strand at 309.904 kb on + strand at 310.041 kb on - strand at 310.118 kb on + strand, within SMc00355 at 310.238 kb on + strand, within SMc00355 at 310.421 kb on + strand, within SMc00355 at 310.421 kb on + strand, within SMc00355 at 310.421 kb on + strand, within SMc00355 at 310.421 kb on + strand, within SMc00355 at 310.422 kb on - strand, within SMc00355 at 310.422 kb on - strand, within SMc00355 at 310.422 kb on - strand, within SMc00355 at 310.634 kb on + strand, within SMc00355 at 311.200 kb on + strand, within SMc00356 at 311.303 kb on - strand, within SMc00356 at 311.303 kb on - strand, within SMc00356 at 311.303 kb on - strand, within SMc00356 at 311.459 kb on + strand, within SMc00356 at 311.459 kb on + strand, within SMc00356 at 311.635 kb on + strand, within SMc00356 at 311.635 kb on + strand, within SMc00356 at 311.786 kb on - strand, within SMc00356 at 311.866 kb on + strand, within SMc00356
Per-strain Table
Position Strand Gene LocusTag Fraction LB, pH6 remove 309,822 - +0.1 309,862 + +0.2 309,877 + +0.1 309,904 + +1.1 310,041 - -0.3 310,118 + SMc00355 0.12 +4.5 310,238 + SMc00355 0.24 +3.9 310,421 + SMc00355 0.41 +3.1 310,421 + SMc00355 0.41 +3.1 310,421 + SMc00355 0.41 +4.2 310,421 + SMc00355 0.41 +4.7 310,422 - SMc00355 0.41 +4.1 310,422 - SMc00355 0.41 +3.8 310,422 - SMc00355 0.41 +2.6 310,634 + SMc00355 0.61 +5.2 311,200 + SMc00356 0.15 -0.0 311,303 - SMc00356 0.25 -2.0 311,303 - SMc00356 0.25 -0.5 311,303 - SMc00356 0.25 +0.9 311,459 + SMc00356 0.40 +1.0 311,459 + SMc00356 0.40 +0.6 311,635 + SMc00356 0.57 -1.6 311,635 + SMc00356 0.57 +0.7 311,786 - SMc00356 0.71 -1.5 311,866 + SMc00356 0.79 +0.9
Or see this region's nucleotide sequence