Experiment: LB, pH6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00013 and SMc00014 are separated by 194 nucleotides SMc00014 and SMc00085 are separated by 7 nucleotides SMc00085 and SMc00016 are separated by 51 nucleotides
SMc00013: SMc00013 - cytochrome C oxidase subunit III transmembrane protein, at 996,489 to 997,367
SMc00013
SMc00014: SMc00014 - hypothetical protein, at 997,562 to 997,945
SMc00014
SMc00085: SMc00085 - cytochrome oxidase complex biogenesis factor transmembrane protein, at 997,953 to 998,681
SMc00085
SMc00016: SMc00016 - 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, at 998,733 to 999,785
SMc00016
Position (kb) 997
998
999 Strain fitness (log2 ratio) -1
0
1
2 at 997.092 kb on + strand, within SMc00013 at 997.326 kb on + strand at 997.327 kb on - strand at 997.374 kb on + strand at 997.374 kb on + strand at 997.428 kb on - strand at 997.428 kb on - strand at 997.434 kb on + strand at 997.434 kb on + strand at 997.435 kb on - strand at 997.435 kb on - strand at 997.873 kb on + strand, within SMc00014 at 998.247 kb on + strand, within SMc00085 at 998.248 kb on - strand, within SMc00085 at 998.265 kb on - strand, within SMc00085 at 998.265 kb on - strand, within SMc00085 at 998.452 kb on - strand, within SMc00085 at 998.452 kb on - strand, within SMc00085 at 998.469 kb on - strand, within SMc00085 at 998.520 kb on - strand, within SMc00085 at 998.604 kb on + strand, within SMc00085 at 998.658 kb on + strand at 998.658 kb on + strand at 998.658 kb on + strand at 998.659 kb on - strand at 998.659 kb on - strand at 998.659 kb on - strand at 998.659 kb on - strand at 998.659 kb on - strand at 998.721 kb on + strand at 998.723 kb on + strand at 998.723 kb on + strand at 998.723 kb on + strand at 998.723 kb on + strand at 998.723 kb on + strand at 998.725 kb on + strand at 998.725 kb on + strand at 998.725 kb on + strand at 998.725 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB, pH6 remove 997,092 + SMc00013 0.69 -0.1 997,326 + -0.6 997,327 - -0.3 997,374 + -0.6 997,374 + -0.4 997,428 - +1.1 997,428 - +0.2 997,434 + -0.9 997,434 + +0.7 997,435 - +0.8 997,435 - +1.9 997,873 + SMc00014 0.81 -0.2 998,247 + SMc00085 0.40 -1.1 998,248 - SMc00085 0.40 +0.9 998,265 - SMc00085 0.43 -1.5 998,265 - SMc00085 0.43 -1.7 998,452 - SMc00085 0.68 -1.5 998,452 - SMc00085 0.68 -1.1 998,469 - SMc00085 0.71 -0.5 998,520 - SMc00085 0.78 -0.9 998,604 + SMc00085 0.89 -0.7 998,658 + -0.2 998,658 + +0.1 998,658 + -0.1 998,659 - -1.2 998,659 - -0.4 998,659 - +1.7 998,659 - +0.6 998,659 - +0.4 998,721 + +0.6 998,723 + -0.3 998,723 + +0.5 998,723 + +0.2 998,723 + -0.1 998,723 + -0.3 998,725 + -0.2 998,725 + -0.2 998,725 + +0.7 998,725 + +0.3
Or see this region's nucleotide sequence