Strain Fitness in Sinorhizobium meliloti 1021 around SMc00073

Experiment: LB, pH6

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc00018 and SMc00072 are separated by 210 nucleotidesSMc00072 and SMc00073 are separated by 55 nucleotidesSMc00073 and SMc00019 are separated by 92 nucleotidesSMc00019 and SMc00074 are separated by 157 nucleotides SMc00018: SMc00018 - ribonuclease H, at 1,000,917 to 1,001,378 SMc00018 SMc00072: SMc00072 - peroxiredoxin protein, at 1,001,589 to 1,002,074 SMc00072 SMc00073: SMc00073 - hypothetical protein, at 1,002,130 to 1,003,068 SMc00073 SMc00019: SMc00019 - hypothetical protein, at 1,003,161 to 1,003,766 SMc00019 SMc00074: SMc00074 - transmembrane signal peptide protein, at 1,003,924 to 1,006,836 SMc00074 Position (kb) 1002 1003 1004Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1001.376 kb on + strandat 1001.377 kb on - strandat 1001.756 kb on + strand, within SMc00072at 1002.093 kb on - strandat 1002.095 kb on - strandat 1002.095 kb on - strandat 1002.095 kb on - strandat 1002.118 kb on + strandat 1002.119 kb on - strandat 1002.120 kb on + strandat 1002.121 kb on - strandat 1002.196 kb on - strandat 1002.534 kb on + strand, within SMc00073at 1002.535 kb on - strand, within SMc00073at 1002.535 kb on - strand, within SMc00073at 1002.764 kb on + strand, within SMc00073at 1002.765 kb on - strand, within SMc00073at 1003.025 kb on - strandat 1003.041 kb on - strandat 1003.041 kb on - strandat 1003.147 kb on - strandat 1003.152 kb on - strandat 1003.152 kb on - strandat 1003.181 kb on + strandat 1003.182 kb on - strandat 1003.590 kb on + strand, within SMc00019at 1003.699 kb on - strand, within SMc00019

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Per-strain Table

Position Strand Gene LocusTag Fraction LB, pH6
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1,001,376 + -2.0
1,001,377 - -1.2
1,001,756 + SMc00072 0.34 -0.2
1,002,093 - -0.2
1,002,095 - +1.9
1,002,095 - +0.9
1,002,095 - +0.9
1,002,118 + +0.0
1,002,119 - -0.7
1,002,120 + +0.3
1,002,121 - +2.6
1,002,196 - -2.9
1,002,534 + SMc00073 0.43 -1.8
1,002,535 - SMc00073 0.43 -1.4
1,002,535 - SMc00073 0.43 +0.3
1,002,764 + SMc00073 0.68 -0.1
1,002,765 - SMc00073 0.68 -1.8
1,003,025 - +0.3
1,003,041 - +0.4
1,003,041 - -1.0
1,003,147 - +1.0
1,003,152 - -0.2
1,003,152 - -2.0
1,003,181 + +0.6
1,003,182 - -0.4
1,003,590 + SMc00019 0.71 -1.1
1,003,699 - SMc00019 0.89 -0.0

Or see this region's nucleotide sequence