Experiment: LB, pH6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00018 and SMc00072 are separated by 210 nucleotides SMc00072 and SMc00073 are separated by 55 nucleotides SMc00073 and SMc00019 are separated by 92 nucleotides SMc00019 and SMc00074 are separated by 157 nucleotides
SMc00018: SMc00018 - ribonuclease H, at 1,000,917 to 1,001,378
SMc00018
SMc00072: SMc00072 - peroxiredoxin protein, at 1,001,589 to 1,002,074
SMc00072
SMc00073: SMc00073 - hypothetical protein, at 1,002,130 to 1,003,068
SMc00073
SMc00019: SMc00019 - hypothetical protein, at 1,003,161 to 1,003,766
SMc00019
SMc00074: SMc00074 - transmembrane signal peptide protein, at 1,003,924 to 1,006,836
SMc00074
Position (kb)
1002
1003
1004 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1001.376 kb on + strand at 1001.377 kb on - strand at 1001.756 kb on + strand, within SMc00072 at 1002.093 kb on - strand at 1002.095 kb on - strand at 1002.095 kb on - strand at 1002.095 kb on - strand at 1002.118 kb on + strand at 1002.119 kb on - strand at 1002.120 kb on + strand at 1002.121 kb on - strand at 1002.196 kb on - strand at 1002.534 kb on + strand, within SMc00073 at 1002.535 kb on - strand, within SMc00073 at 1002.535 kb on - strand, within SMc00073 at 1002.764 kb on + strand, within SMc00073 at 1002.765 kb on - strand, within SMc00073 at 1003.025 kb on - strand at 1003.041 kb on - strand at 1003.041 kb on - strand at 1003.147 kb on - strand at 1003.152 kb on - strand at 1003.152 kb on - strand at 1003.181 kb on + strand at 1003.182 kb on - strand at 1003.590 kb on + strand, within SMc00019 at 1003.699 kb on - strand, within SMc00019
Per-strain Table
Position Strand Gene LocusTag Fraction LB, pH6 remove 1,001,376 + -2.0 1,001,377 - -1.2 1,001,756 + SMc00072 0.34 -0.2 1,002,093 - -0.2 1,002,095 - +1.9 1,002,095 - +0.9 1,002,095 - +0.9 1,002,118 + +0.0 1,002,119 - -0.7 1,002,120 + +0.3 1,002,121 - +2.6 1,002,196 - -2.9 1,002,534 + SMc00073 0.43 -1.8 1,002,535 - SMc00073 0.43 -1.4 1,002,535 - SMc00073 0.43 +0.3 1,002,764 + SMc00073 0.68 -0.1 1,002,765 - SMc00073 0.68 -1.8 1,003,025 - +0.3 1,003,041 - +0.4 1,003,041 - -1.0 1,003,147 - +1.0 1,003,152 - -0.2 1,003,152 - -2.0 1,003,181 + +0.6 1,003,182 - -0.4 1,003,590 + SMc00019 0.71 -1.1 1,003,699 - SMc00019 0.89 -0.0
Or see this region's nucleotide sequence