Experiment: LB, pH6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00450 and SMc00130 overlap by 1 nucleotides SMc00130 and SMc00012 are separated by 11 nucleotides SMc00012 and SMc00013 are separated by 61 nucleotides SMc00013 and SMc00014 are separated by 194 nucleotides SMc00014 and SMc00085 are separated by 7 nucleotides
SMc00450: SMc00450 - protoheme IX farnesyltransferase, at 994,627 to 995,679
SMc00450
SMc00130: SMc00130 - hypothetical protein, at 995,679 to 995,819
SMc00130
SMc00012: SMc00012 - cytochrome C oxidase assembly protein, at 995,831 to 996,427
SMc00012
SMc00013: SMc00013 - cytochrome C oxidase subunit III transmembrane protein, at 996,489 to 997,367
SMc00013
SMc00014: SMc00014 - hypothetical protein, at 997,562 to 997,945
SMc00014
SMc00085: SMc00085 - cytochrome oxidase complex biogenesis factor transmembrane protein, at 997,953 to 998,681
SMc00085
Position (kb) 996
997
998 Strain fitness (log2 ratio) -2
-1
0
1
2 at 995.927 kb on + strand, within SMc00012 at 995.972 kb on + strand, within SMc00012 at 996.321 kb on + strand, within SMc00012 at 996.472 kb on + strand at 996.519 kb on + strand at 996.519 kb on + strand at 996.519 kb on + strand at 996.519 kb on + strand at 996.519 kb on + strand at 996.520 kb on - strand at 996.607 kb on - strand, within SMc00013 at 996.691 kb on - strand, within SMc00013 at 997.092 kb on + strand, within SMc00013 at 997.326 kb on + strand at 997.327 kb on - strand at 997.374 kb on + strand at 997.374 kb on + strand at 997.428 kb on - strand at 997.428 kb on - strand at 997.434 kb on + strand at 997.434 kb on + strand at 997.435 kb on - strand at 997.435 kb on - strand at 997.873 kb on + strand, within SMc00014 at 998.247 kb on + strand, within SMc00085 at 998.248 kb on - strand, within SMc00085 at 998.265 kb on - strand, within SMc00085 at 998.265 kb on - strand, within SMc00085
Per-strain Table
Position Strand Gene LocusTag Fraction LB, pH6 remove 995,927 + SMc00012 0.16 +0.7 995,972 + SMc00012 0.24 -0.5 996,321 + SMc00012 0.82 -1.2 996,472 + +0.5 996,519 + -0.5 996,519 + +0.6 996,519 + -1.4 996,519 + -0.1 996,519 + -2.0 996,520 - -0.1 996,607 - SMc00013 0.13 -1.3 996,691 - SMc00013 0.23 -1.5 997,092 + SMc00013 0.69 -0.1 997,326 + -0.6 997,327 - -0.3 997,374 + -0.6 997,374 + -0.4 997,428 - +1.1 997,428 - +0.2 997,434 + -0.9 997,434 + +0.7 997,435 - +0.8 997,435 - +1.9 997,873 + SMc00014 0.81 -0.2 998,247 + SMc00085 0.40 -1.1 998,248 - SMc00085 0.40 +0.9 998,265 - SMc00085 0.43 -1.5 998,265 - SMc00085 0.43 -1.7
Or see this region's nucleotide sequence