Strain Fitness in Sinorhizobium meliloti 1021 around SMa1562

Experiment: LB, pH6

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMa1561 and SMa1562 are separated by 54 nucleotidesSMa1562 and SMa1564 are separated by 9 nucleotides SMa1561: SMa1561 - chemotaxis protein CheB, at 864,232 to 865,296 SMa1561 SMa1562: SMa1562 - Pilus assembly protein, at 865,351 to 866,316 SMa1562 SMa1564: SMa1564 - Pilus assembly protein, at 866,326 to 867,327 SMa1564 Position (kb) 865 866 867Strain fitness (log2 ratio) -2 -1 0 1at 864.437 kb on + strand, within SMa1561at 864.438 kb on - strand, within SMa1561at 864.464 kb on + strand, within SMa1561at 864.465 kb on - strand, within SMa1561at 864.626 kb on + strand, within SMa1561at 864.920 kb on - strand, within SMa1561at 864.920 kb on - strand, within SMa1561at 864.920 kb on - strand, within SMa1561at 864.969 kb on - strand, within SMa1561at 865.019 kb on - strand, within SMa1561at 865.232 kb on + strandat 865.232 kb on + strandat 865.352 kb on + strandat 865.353 kb on - strandat 865.637 kb on + strand, within SMa1562at 865.638 kb on - strand, within SMa1562at 865.752 kb on + strand, within SMa1562at 865.848 kb on - strand, within SMa1562at 865.926 kb on - strand, within SMa1562at 866.004 kb on + strand, within SMa1562at 866.005 kb on - strand, within SMa1562at 866.116 kb on + strand, within SMa1562at 866.117 kb on - strand, within SMa1562at 866.219 kb on + strand, within SMa1562at 866.219 kb on + strand, within SMa1562at 866.220 kb on - strandat 866.220 kb on - strandat 866.220 kb on - strandat 866.220 kb on - strandat 866.269 kb on + strandat 866.269 kb on + strandat 866.269 kb on + strandat 866.269 kb on + strandat 866.269 kb on + strandat 866.269 kb on + strandat 866.438 kb on + strand, within SMa1564at 866.438 kb on + strand, within SMa1564at 866.438 kb on + strand, within SMa1564at 866.892 kb on - strand, within SMa1564at 866.892 kb on - strand, within SMa1564at 866.963 kb on - strand, within SMa1564at 866.963 kb on - strand, within SMa1564at 866.991 kb on + strand, within SMa1564at 867.245 kb on + strandat 867.245 kb on + strandat 867.246 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB, pH6
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864,437 + SMa1561 0.19 -0.5
864,438 - SMa1561 0.19 -0.1
864,464 + SMa1561 0.22 +0.4
864,465 - SMa1561 0.22 -0.7
864,626 + SMa1561 0.37 -0.0
864,920 - SMa1561 0.65 -0.6
864,920 - SMa1561 0.65 +1.2
864,920 - SMa1561 0.65 +0.2
864,969 - SMa1561 0.69 -2.2
865,019 - SMa1561 0.74 -0.1
865,232 + +0.5
865,232 + +0.3
865,352 + +0.6
865,353 - -0.4
865,637 + SMa1562 0.30 -1.2
865,638 - SMa1562 0.30 -0.4
865,752 + SMa1562 0.42 -0.4
865,848 - SMa1562 0.51 -0.8
865,926 - SMa1562 0.60 -0.3
866,004 + SMa1562 0.68 -0.8
866,005 - SMa1562 0.68 -0.9
866,116 + SMa1562 0.79 -0.6
866,117 - SMa1562 0.79 -0.1
866,219 + SMa1562 0.90 +1.4
866,219 + SMa1562 0.90 +0.1
866,220 - -1.4
866,220 - -0.9
866,220 - -0.9
866,220 - +0.1
866,269 + -1.4
866,269 + +1.4
866,269 + +0.5
866,269 + -0.6
866,269 + +0.1
866,269 + -0.5
866,438 + SMa1564 0.11 -0.4
866,438 + SMa1564 0.11 +0.2
866,438 + SMa1564 0.11 -1.0
866,892 - SMa1564 0.56 -0.5
866,892 - SMa1564 0.56 -0.6
866,963 - SMa1564 0.64 -1.2
866,963 - SMa1564 0.64 +0.7
866,991 + SMa1564 0.66 +0.8
867,245 + -1.5
867,245 + -0.4
867,246 - -0.5

Or see this region's nucleotide sequence