Experiment: LB, pH6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1467 and SMa1471 are separated by 150 nucleotides SMa1471 and SMa1473 overlap by 1 nucleotides SMa1473 and SMa1476 are separated by 91 nucleotides
SMa1467: SMa1467 - inner-membrane permease, at 808,366 to 809,028
SMa1467
SMa1471: SMa1471 - hypothetical protein, at 809,179 to 809,859
SMa1471
SMa1473: SMa1473 - aminopeptidase, at 809,859 to 811,163
SMa1473
SMa1476: SMa1476 - AraC family transcriptional regulator, at 811,255 to 812,211
SMa1476
Position (kb) 809
810
811
812 Strain fitness (log2 ratio) -2
-1
0
1
2 at 808.987 kb on + strand at 808.988 kb on - strand at 809.050 kb on - strand at 809.050 kb on - strand at 809.167 kb on + strand at 809.220 kb on - strand at 809.263 kb on - strand, within SMa1471 at 809.263 kb on - strand, within SMa1471 at 809.315 kb on + strand, within SMa1471 at 809.316 kb on - strand, within SMa1471 at 809.316 kb on - strand, within SMa1471 at 809.316 kb on - strand, within SMa1471 at 809.386 kb on + strand, within SMa1471 at 809.387 kb on - strand, within SMa1471 at 809.541 kb on + strand, within SMa1471 at 809.541 kb on + strand, within SMa1471 at 809.680 kb on - strand, within SMa1471 at 809.681 kb on + strand, within SMa1471 at 809.681 kb on + strand, within SMa1471 at 809.681 kb on + strand, within SMa1471 at 809.682 kb on - strand, within SMa1471 at 809.759 kb on + strand, within SMa1471 at 809.927 kb on + strand at 809.982 kb on - strand at 809.983 kb on + strand at 809.983 kb on + strand at 809.984 kb on - strand at 809.984 kb on - strand at 809.984 kb on - strand at 810.019 kb on + strand, within SMa1473 at 810.019 kb on + strand, within SMa1473 at 810.020 kb on - strand, within SMa1473 at 810.043 kb on + strand, within SMa1473 at 810.044 kb on - strand, within SMa1473 at 810.044 kb on - strand, within SMa1473 at 810.110 kb on - strand, within SMa1473 at 810.135 kb on + strand, within SMa1473 at 810.136 kb on - strand, within SMa1473 at 810.136 kb on - strand, within SMa1473 at 810.136 kb on - strand, within SMa1473 at 810.214 kb on + strand, within SMa1473 at 810.215 kb on - strand, within SMa1473 at 810.226 kb on + strand, within SMa1473 at 810.242 kb on - strand, within SMa1473 at 810.295 kb on + strand, within SMa1473 at 810.300 kb on + strand, within SMa1473 at 810.314 kb on + strand, within SMa1473 at 810.321 kb on - strand, within SMa1473 at 810.451 kb on + strand, within SMa1473 at 810.451 kb on + strand, within SMa1473 at 810.451 kb on + strand, within SMa1473 at 810.451 kb on + strand, within SMa1473 at 810.452 kb on - strand, within SMa1473 at 810.541 kb on - strand, within SMa1473 at 810.541 kb on - strand, within SMa1473 at 810.546 kb on + strand, within SMa1473 at 810.546 kb on + strand, within SMa1473 at 810.798 kb on + strand, within SMa1473 at 810.798 kb on + strand, within SMa1473 at 810.799 kb on - strand, within SMa1473 at 810.826 kb on + strand, within SMa1473 at 810.827 kb on - strand, within SMa1473 at 810.880 kb on + strand, within SMa1473 at 810.881 kb on - strand, within SMa1473 at 810.935 kb on - strand, within SMa1473 at 810.944 kb on + strand, within SMa1473 at 810.945 kb on - strand, within SMa1473 at 811.149 kb on + strand at 811.232 kb on - strand at 811.232 kb on - strand at 811.232 kb on - strand at 811.256 kb on + strand at 811.463 kb on + strand, within SMa1476 at 811.464 kb on - strand, within SMa1476 at 811.464 kb on - strand, within SMa1476 at 811.464 kb on - strand, within SMa1476 at 811.464 kb on - strand, within SMa1476 at 811.718 kb on + strand, within SMa1476 at 811.718 kb on + strand, within SMa1476 at 811.719 kb on - strand, within SMa1476 at 811.799 kb on + strand, within SMa1476 at 811.800 kb on - strand, within SMa1476 at 811.800 kb on - strand, within SMa1476 at 811.800 kb on - strand, within SMa1476 at 811.800 kb on - strand, within SMa1476 at 812.127 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB, pH6 remove 808,987 + +0.2 808,988 - -1.7 809,050 - +0.2 809,050 - -0.4 809,167 + -0.0 809,220 - +0.0 809,263 - SMa1471 0.12 -1.0 809,263 - SMa1471 0.12 +1.1 809,315 + SMa1471 0.20 -0.9 809,316 - SMa1471 0.20 +0.6 809,316 - SMa1471 0.20 -0.1 809,316 - SMa1471 0.20 +0.5 809,386 + SMa1471 0.30 +1.4 809,387 - SMa1471 0.31 -0.2 809,541 + SMa1471 0.53 -0.5 809,541 + SMa1471 0.53 +0.0 809,680 - SMa1471 0.74 -1.1 809,681 + SMa1471 0.74 -1.2 809,681 + SMa1471 0.74 +0.2 809,681 + SMa1471 0.74 -0.5 809,682 - SMa1471 0.74 +0.4 809,759 + SMa1471 0.85 -0.7 809,927 + -0.2 809,982 - +0.6 809,983 + +0.2 809,983 + +0.4 809,984 - -0.3 809,984 - -1.0 809,984 - +0.3 810,019 + SMa1473 0.12 -0.4 810,019 + SMa1473 0.12 -0.3 810,020 - SMa1473 0.12 -0.5 810,043 + SMa1473 0.14 -1.4 810,044 - SMa1473 0.14 +1.5 810,044 - SMa1473 0.14 +0.4 810,110 - SMa1473 0.19 -0.6 810,135 + SMa1473 0.21 -1.1 810,136 - SMa1473 0.21 -0.6 810,136 - SMa1473 0.21 +0.2 810,136 - SMa1473 0.21 +2.4 810,214 + SMa1473 0.27 +0.1 810,215 - SMa1473 0.27 +1.3 810,226 + SMa1473 0.28 -0.4 810,242 - SMa1473 0.29 +0.1 810,295 + SMa1473 0.33 +0.1 810,300 + SMa1473 0.34 +0.2 810,314 + SMa1473 0.35 +0.8 810,321 - SMa1473 0.35 -1.3 810,451 + SMa1473 0.45 +0.3 810,451 + SMa1473 0.45 +0.7 810,451 + SMa1473 0.45 +0.4 810,451 + SMa1473 0.45 -0.6 810,452 - SMa1473 0.45 +0.5 810,541 - SMa1473 0.52 -0.2 810,541 - SMa1473 0.52 -0.4 810,546 + SMa1473 0.53 -0.0 810,546 + SMa1473 0.53 +1.0 810,798 + SMa1473 0.72 +2.1 810,798 + SMa1473 0.72 +0.8 810,799 - SMa1473 0.72 -0.1 810,826 + SMa1473 0.74 -0.2 810,827 - SMa1473 0.74 +2.2 810,880 + SMa1473 0.78 -0.2 810,881 - SMa1473 0.78 +0.4 810,935 - SMa1473 0.82 +0.0 810,944 + SMa1473 0.83 -0.2 810,945 - SMa1473 0.83 +0.6 811,149 + -0.1 811,232 - -0.4 811,232 - +0.1 811,232 - +0.1 811,256 + -0.2 811,463 + SMa1476 0.22 -0.2 811,464 - SMa1476 0.22 -0.4 811,464 - SMa1476 0.22 +0.6 811,464 - SMa1476 0.22 -1.5 811,464 - SMa1476 0.22 -2.0 811,718 + SMa1476 0.48 -0.2 811,718 + SMa1476 0.48 -0.9 811,719 - SMa1476 0.48 -0.7 811,799 + SMa1476 0.57 +0.6 811,800 - SMa1476 0.57 -0.5 811,800 - SMa1476 0.57 -1.0 811,800 - SMa1476 0.57 -0.8 811,800 - SMa1476 0.57 -0.6 812,127 - +0.9
Or see this region's nucleotide sequence