Experiment: LB, pH6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0557 and SMa0558 are separated by 123 nucleotides SMa0558 and SMa0559 are separated by 57 nucleotides SMa0559 and SMa0561 are separated by 143 nucleotides
SMa0557: SMa0557 - LysR family transcriptional regulator, at 295,587 to 296,474
SMa0557
SMa0558: SMa0558 - hypothetical protein, at 296,598 to 296,990
SMa0558
SMa0559: SMa0559 - 4-carboxymuconolactone decarboxylase, at 297,048 to 297,791
SMa0559
SMa0561: SMa0561 - hypothetical protein, at 297,935 to 298,318
SMa0561
Position (kb) 296
297 Strain fitness (log2 ratio) -2
-1
0
1
2 at 295.651 kb on + strand at 295.652 kb on - strand at 295.652 kb on - strand at 295.689 kb on + strand, within SMa0557 at 295.720 kb on + strand, within SMa0557 at 295.748 kb on - strand, within SMa0557 at 295.864 kb on + strand, within SMa0557 at 295.864 kb on + strand, within SMa0557 at 295.876 kb on + strand, within SMa0557 at 295.877 kb on - strand, within SMa0557 at 295.877 kb on - strand, within SMa0557 at 295.877 kb on - strand, within SMa0557 at 295.880 kb on + strand, within SMa0557 at 295.881 kb on - strand, within SMa0557 at 295.980 kb on - strand, within SMa0557 at 295.980 kb on - strand, within SMa0557 at 295.980 kb on - strand, within SMa0557 at 295.980 kb on - strand, within SMa0557 at 296.012 kb on + strand, within SMa0557 at 296.012 kb on + strand, within SMa0557 at 296.013 kb on - strand, within SMa0557 at 296.013 kb on - strand, within SMa0557 at 296.136 kb on + strand, within SMa0557 at 296.136 kb on + strand, within SMa0557 at 296.136 kb on + strand, within SMa0557 at 296.137 kb on - strand, within SMa0557 at 296.142 kb on - strand, within SMa0557 at 296.142 kb on - strand, within SMa0557 at 296.274 kb on + strand, within SMa0557 at 296.274 kb on + strand, within SMa0557 at 296.360 kb on + strand, within SMa0557 at 296.539 kb on - strand at 296.540 kb on + strand at 296.541 kb on - strand at 296.803 kb on - strand, within SMa0558 at 296.853 kb on + strand, within SMa0558 at 296.853 kb on + strand, within SMa0558 at 296.854 kb on - strand, within SMa0558 at 296.854 kb on - strand, within SMa0558 at 296.854 kb on - strand, within SMa0558 at 296.901 kb on - strand, within SMa0558 at 297.147 kb on + strand, within SMa0559 at 297.147 kb on + strand, within SMa0559 at 297.166 kb on - strand, within SMa0559 at 297.264 kb on + strand, within SMa0559 at 297.264 kb on + strand, within SMa0559 at 297.264 kb on + strand, within SMa0559 at 297.264 kb on + strand, within SMa0559 at 297.264 kb on + strand, within SMa0559 at 297.265 kb on - strand, within SMa0559 at 297.267 kb on + strand, within SMa0559 at 297.336 kb on + strand, within SMa0559 at 297.337 kb on - strand, within SMa0559 at 297.339 kb on + strand, within SMa0559 at 297.556 kb on + strand, within SMa0559 at 297.556 kb on + strand, within SMa0559 at 297.557 kb on - strand, within SMa0559 at 297.557 kb on - strand, within SMa0559 at 297.557 kb on - strand, within SMa0559 at 297.852 kb on + strand at 297.852 kb on + strand at 297.853 kb on - strand at 297.853 kb on - strand at 297.951 kb on + strand at 297.951 kb on + strand at 297.951 kb on + strand at 297.952 kb on - strand at 297.952 kb on - strand at 297.952 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB, pH6 remove 295,651 + +0.1 295,652 - +0.4 295,652 - +0.2 295,689 + SMa0557 0.11 -1.2 295,720 + SMa0557 0.15 +0.1 295,748 - SMa0557 0.18 +0.1 295,864 + SMa0557 0.31 -1.6 295,864 + SMa0557 0.31 +0.3 295,876 + SMa0557 0.33 -0.2 295,877 - SMa0557 0.33 +1.0 295,877 - SMa0557 0.33 -0.0 295,877 - SMa0557 0.33 +1.0 295,880 + SMa0557 0.33 -0.4 295,881 - SMa0557 0.33 -0.4 295,980 - SMa0557 0.44 -0.2 295,980 - SMa0557 0.44 +0.1 295,980 - SMa0557 0.44 -0.2 295,980 - SMa0557 0.44 -1.1 296,012 + SMa0557 0.48 +0.1 296,012 + SMa0557 0.48 +0.3 296,013 - SMa0557 0.48 -0.2 296,013 - SMa0557 0.48 +1.0 296,136 + SMa0557 0.62 -0.0 296,136 + SMa0557 0.62 +0.8 296,136 + SMa0557 0.62 +0.7 296,137 - SMa0557 0.62 -0.3 296,142 - SMa0557 0.62 -0.2 296,142 - SMa0557 0.62 -0.5 296,274 + SMa0557 0.77 -0.2 296,274 + SMa0557 0.77 +0.4 296,360 + SMa0557 0.87 +0.2 296,539 - +0.2 296,540 + -0.1 296,541 - +0.3 296,803 - SMa0558 0.52 -1.4 296,853 + SMa0558 0.65 -0.8 296,853 + SMa0558 0.65 -1.2 296,854 - SMa0558 0.65 -0.6 296,854 - SMa0558 0.65 -0.4 296,854 - SMa0558 0.65 -1.9 296,901 - SMa0558 0.77 -0.5 297,147 + SMa0559 0.13 -1.6 297,147 + SMa0559 0.13 -0.4 297,166 - SMa0559 0.16 +0.8 297,264 + SMa0559 0.29 -0.6 297,264 + SMa0559 0.29 -0.8 297,264 + SMa0559 0.29 -0.5 297,264 + SMa0559 0.29 +2.3 297,264 + SMa0559 0.29 -1.2 297,265 - SMa0559 0.29 -0.2 297,267 + SMa0559 0.29 +1.1 297,336 + SMa0559 0.39 +1.1 297,337 - SMa0559 0.39 +0.4 297,339 + SMa0559 0.39 -0.1 297,556 + SMa0559 0.68 +0.1 297,556 + SMa0559 0.68 -0.9 297,557 - SMa0559 0.68 +1.4 297,557 - SMa0559 0.68 -0.3 297,557 - SMa0559 0.68 +0.5 297,852 + +1.1 297,852 + +0.7 297,853 - +0.5 297,853 - -0.5 297,951 + +2.0 297,951 + +1.3 297,951 + +0.3 297,952 - -0.5 297,952 - -0.7 297,952 - -0.6
Or see this region's nucleotide sequence