Experiment: LB, pH6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0470 and SMa0471 are separated by 662 nucleotides SMa0471 and SMa0473 overlap by 4 nucleotides SMa0473 and SMa0475 are separated by 188 nucleotides
SMa0470: SMa0470 - ABC transporter ATP-binding protein, at 255,727 to 257,562
SMa0470
SMa0471: SMa0471 - hypothetical protein, at 258,225 to 258,533
SMa0471
SMa0473: SMa0473 - hypothetical protein, at 258,530 to 258,823
SMa0473
SMa0475: SMa0475 - TRm17a transposase, at 259,012 to 259,911
SMa0475
Position (kb) 258
259 Strain fitness (log2 ratio) -2
-1
0
1
2 at 257.707 kb on + strand at 257.708 kb on - strand at 257.708 kb on - strand at 257.775 kb on + strand at 257.868 kb on + strand at 257.868 kb on + strand at 257.871 kb on + strand at 257.871 kb on + strand at 257.871 kb on + strand at 257.871 kb on + strand at 257.872 kb on - strand at 257.903 kb on + strand at 257.903 kb on + strand at 257.904 kb on - strand at 257.904 kb on - strand at 257.948 kb on + strand at 257.949 kb on - strand at 258.007 kb on + strand at 258.103 kb on + strand at 258.104 kb on - strand at 258.104 kb on - strand at 258.108 kb on + strand at 258.108 kb on + strand at 258.109 kb on - strand at 258.109 kb on - strand at 258.584 kb on + strand, within SMa0473 at 258.585 kb on - strand, within SMa0473 at 258.713 kb on - strand, within SMa0473 at 258.713 kb on - strand, within SMa0473 at 258.728 kb on + strand, within SMa0473 at 258.729 kb on - strand, within SMa0473 at 258.741 kb on - strand, within SMa0473 at 258.822 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB, pH6 remove 257,707 + +1.4 257,708 - +0.2 257,708 - +1.8 257,775 + +0.2 257,868 + -0.3 257,868 + -0.3 257,871 + -0.4 257,871 + -2.0 257,871 + -1.0 257,871 + -1.2 257,872 - +0.8 257,903 + -1.3 257,903 + +0.1 257,904 - +0.7 257,904 - -0.9 257,948 + +0.2 257,949 - +0.0 258,007 + +2.2 258,103 + -1.3 258,104 - -0.3 258,104 - +0.5 258,108 + -0.2 258,108 + +0.5 258,109 - -1.6 258,109 - -0.8 258,584 + SMa0473 0.18 -0.4 258,585 - SMa0473 0.19 -0.2 258,713 - SMa0473 0.62 -0.1 258,713 - SMa0473 0.62 +0.5 258,728 + SMa0473 0.67 -0.3 258,729 - SMa0473 0.68 -1.8 258,741 - SMa0473 0.72 -1.9 258,822 - -0.3
Or see this region's nucleotide sequence