Strain Fitness in Sinorhizobium meliloti 1021 around SMa0389

Experiment: LB, pH6

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMa0387 and SMa0389 are separated by 130 nucleotidesSMa0389 and SMa0391 are separated by 305 nucleotides SMa0387: SMa0387 - histidinol-phosphate aminotransferase, at 209,020 to 210,132 SMa0387 SMa0389: SMa0389 - short chain alcohol dehydrogenase-related dehydrogenase, at 210,263 to 211,030 SMa0389 SMa0391: SMa0391 - ABC transporter ATP-binding protein, at 211,336 to 212,469 SMa0391 Position (kb) 210 211 212Strain fitness (log2 ratio) -2 -1 0 1 2at 209.303 kb on + strand, within SMa0387at 209.303 kb on + strand, within SMa0387at 209.303 kb on + strand, within SMa0387at 209.303 kb on + strand, within SMa0387at 209.303 kb on + strand, within SMa0387at 209.303 kb on + strand, within SMa0387at 209.303 kb on + strand, within SMa0387at 209.307 kb on + strand, within SMa0387at 209.307 kb on + strand, within SMa0387at 209.308 kb on - strand, within SMa0387at 209.332 kb on + strand, within SMa0387at 209.409 kb on + strand, within SMa0387at 209.409 kb on + strand, within SMa0387at 209.410 kb on - strand, within SMa0387at 209.410 kb on - strand, within SMa0387at 209.410 kb on - strand, within SMa0387at 209.410 kb on - strand, within SMa0387at 209.410 kb on - strand, within SMa0387at 209.461 kb on + strand, within SMa0387at 209.461 kb on + strand, within SMa0387at 209.513 kb on + strand, within SMa0387at 209.531 kb on + strand, within SMa0387at 209.532 kb on - strand, within SMa0387at 209.540 kb on + strand, within SMa0387at 209.655 kb on + strand, within SMa0387at 209.655 kb on + strand, within SMa0387at 209.754 kb on + strand, within SMa0387at 209.756 kb on + strandat 209.757 kb on - strand, within SMa0387at 209.783 kb on + strand, within SMa0387at 209.783 kb on + strand, within SMa0387at 209.783 kb on + strand, within SMa0387at 209.784 kb on - strand, within SMa0387at 209.784 kb on - strand, within SMa0387at 209.784 kb on - strand, within SMa0387at 210.041 kb on + strandat 210.078 kb on + strandat 210.078 kb on + strandat 210.079 kb on - strandat 210.080 kb on + strandat 210.081 kb on - strandat 210.081 kb on - strandat 210.167 kb on + strandat 210.173 kb on + strandat 210.195 kb on - strandat 210.197 kb on - strandat 210.197 kb on - strandat 210.197 kb on - strandat 210.198 kb on + strandat 210.198 kb on + strandat 210.198 kb on + strandat 210.199 kb on - strandat 210.199 kb on - strandat 210.199 kb on - strandat 210.199 kb on - strandat 210.199 kb on - strandat 210.203 kb on - strandat 210.205 kb on - strandat 210.221 kb on + strandat 210.222 kb on - strandat 210.222 kb on - strandat 210.327 kb on + strandat 210.338 kb on - strandat 210.394 kb on - strand, within SMa0389at 210.394 kb on - strand, within SMa0389at 210.580 kb on - strand, within SMa0389at 210.598 kb on + strand, within SMa0389at 210.598 kb on + strand, within SMa0389at 210.601 kb on + strand, within SMa0389at 210.601 kb on + strand, within SMa0389at 210.601 kb on + strand, within SMa0389at 210.601 kb on + strand, within SMa0389at 210.601 kb on + strand, within SMa0389at 210.602 kb on - strand, within SMa0389at 210.602 kb on - strand, within SMa0389at 210.602 kb on - strand, within SMa0389at 210.710 kb on + strand, within SMa0389at 210.710 kb on + strand, within SMa0389at 210.710 kb on + strand, within SMa0389at 210.710 kb on + strand, within SMa0389at 210.711 kb on - strand, within SMa0389at 210.711 kb on - strand, within SMa0389at 210.711 kb on - strand, within SMa0389at 210.863 kb on + strandat 210.864 kb on - strand, within SMa0389at 210.864 kb on - strand, within SMa0389at 210.864 kb on - strand, within SMa0389at 210.977 kb on + strandat 210.980 kb on - strandat 210.980 kb on - strandat 210.994 kb on + strandat 210.994 kb on + strandat 210.995 kb on - strandat 210.995 kb on - strandat 210.995 kb on - strandat 210.995 kb on - strandat 211.014 kb on - strandat 211.222 kb on + strandat 211.223 kb on - strandat 211.225 kb on + strandat 211.226 kb on - strandat 211.232 kb on + strandat 211.232 kb on + strandat 211.232 kb on + strandat 211.233 kb on - strandat 211.233 kb on - strandat 211.235 kb on - strandat 211.249 kb on - strandat 211.288 kb on + strandat 211.335 kb on + strandat 211.335 kb on + strandat 211.336 kb on - strandat 211.614 kb on + strand, within SMa0391at 211.615 kb on - strand, within SMa0391at 211.729 kb on + strand, within SMa0391at 211.729 kb on + strand, within SMa0391

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Per-strain Table

Position Strand Gene LocusTag Fraction LB, pH6
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209,303 + SMa0387 0.25 +0.4
209,303 + SMa0387 0.25 +0.3
209,303 + SMa0387 0.25 +0.4
209,303 + SMa0387 0.25 +0.1
209,303 + SMa0387 0.25 +0.8
209,303 + SMa0387 0.25 +0.6
209,303 + SMa0387 0.25 -0.2
209,307 + SMa0387 0.26 -2.2
209,307 + SMa0387 0.26 +1.2
209,308 - SMa0387 0.26 -0.2
209,332 + SMa0387 0.28 -0.1
209,409 + SMa0387 0.35 -0.2
209,409 + SMa0387 0.35 -1.4
209,410 - SMa0387 0.35 -0.1
209,410 - SMa0387 0.35 +0.0
209,410 - SMa0387 0.35 +0.8
209,410 - SMa0387 0.35 +0.7
209,410 - SMa0387 0.35 -0.3
209,461 + SMa0387 0.40 -0.6
209,461 + SMa0387 0.40 +0.2
209,513 + SMa0387 0.44 +1.5
209,531 + SMa0387 0.46 +1.1
209,532 - SMa0387 0.46 -1.1
209,540 + SMa0387 0.47 +0.1
209,655 + SMa0387 0.57 -0.3
209,655 + SMa0387 0.57 -0.2
209,754 + SMa0387 0.66 -0.3
209,756 + +1.0
209,757 - SMa0387 0.66 +0.5
209,783 + SMa0387 0.69 +0.6
209,783 + SMa0387 0.69 +0.1
209,783 + SMa0387 0.69 +0.3
209,784 - SMa0387 0.69 +0.7
209,784 - SMa0387 0.69 -1.0
209,784 - SMa0387 0.69 -0.3
210,041 + +1.0
210,078 + -0.0
210,078 + +0.3
210,079 - +0.1
210,080 + -1.0
210,081 - -1.1
210,081 - -2.0
210,167 + -0.9
210,173 + -0.3
210,195 - +0.0
210,197 - -0.0
210,197 - +0.8
210,197 - -0.7
210,198 + +0.4
210,198 + -0.3
210,198 + +0.1
210,199 - -0.7
210,199 - +0.2
210,199 - +0.0
210,199 - +0.6
210,199 - +0.1
210,203 - +0.1
210,205 - -1.3
210,221 + -0.6
210,222 - -1.1
210,222 - -0.5
210,327 + +0.3
210,338 - +0.0
210,394 - SMa0389 0.17 +0.1
210,394 - SMa0389 0.17 -0.2
210,580 - SMa0389 0.41 -1.1
210,598 + SMa0389 0.44 +1.4
210,598 + SMa0389 0.44 -0.3
210,601 + SMa0389 0.44 -0.1
210,601 + SMa0389 0.44 +1.0
210,601 + SMa0389 0.44 -0.5
210,601 + SMa0389 0.44 -0.7
210,601 + SMa0389 0.44 -0.8
210,602 - SMa0389 0.44 -0.6
210,602 - SMa0389 0.44 -0.5
210,602 - SMa0389 0.44 +0.5
210,710 + SMa0389 0.58 -0.7
210,710 + SMa0389 0.58 +0.6
210,710 + SMa0389 0.58 +0.9
210,710 + SMa0389 0.58 +1.1
210,711 - SMa0389 0.58 +0.2
210,711 - SMa0389 0.58 -1.5
210,711 - SMa0389 0.58 -0.9
210,863 + +2.0
210,864 - SMa0389 0.78 -0.9
210,864 - SMa0389 0.78 +0.2
210,864 - SMa0389 0.78 -0.8
210,977 + -0.3
210,980 - -0.6
210,980 - +0.6
210,994 + +0.5
210,994 + -0.6
210,995 - -1.4
210,995 - -1.8
210,995 - -0.5
210,995 - -0.1
211,014 - -1.1
211,222 + -1.4
211,223 - +0.5
211,225 + +0.3
211,226 - -1.4
211,232 + +1.4
211,232 + -0.4
211,232 + +1.8
211,233 - +0.2
211,233 - -1.9
211,235 - -1.5
211,249 - -0.2
211,288 + -0.6
211,335 + +0.1
211,335 + +0.0
211,336 - +1.2
211,614 + SMa0391 0.25 +0.1
211,615 - SMa0391 0.25 -0.1
211,729 + SMa0391 0.35 -0.6
211,729 + SMa0391 0.35 -2.3

Or see this region's nucleotide sequence