Experiment: LB, pH6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0180 and SMa0181 are separated by 197 nucleotides SMa0181 and SMa0185 are separated by 255 nucleotides SMa0185 and SMa0187 are separated by 140 nucleotides
SMa0180: SMa0180 - epimerase, at 99,435 to 100,307
SMa0180
SMa0181: SMa0181 - CspA5 cold shock protein transcriptional regulator, at 100,505 to 100,708
SMa0181
SMa0185: SMa0185 - transmembrane-transport protein, at 100,964 to 102,508
SMa0185
SMa0187: SMa0187 - short chain dehydrogenase, at 102,649 to 103,602
SMa0187
Position (kb) 100
101
102
103 Strain fitness (log2 ratio) -2
-1
0
1
2 at 100.035 kb on + strand, within SMa0180 at 100.036 kb on - strand, within SMa0180 at 100.041 kb on + strand, within SMa0180 at 100.041 kb on + strand, within SMa0180 at 100.042 kb on - strand, within SMa0180 at 100.042 kb on - strand, within SMa0180 at 100.042 kb on - strand, within SMa0180 at 100.042 kb on - strand, within SMa0180 at 100.042 kb on - strand, within SMa0180 at 100.042 kb on - strand, within SMa0180 at 100.350 kb on + strand at 100.477 kb on - strand at 100.566 kb on + strand, within SMa0181 at 100.566 kb on + strand, within SMa0181 at 100.703 kb on - strand at 100.711 kb on + strand at 100.711 kb on + strand at 100.755 kb on - strand at 100.755 kb on - strand at 100.793 kb on - strand at 100.793 kb on - strand at 100.814 kb on + strand at 100.814 kb on + strand at 100.815 kb on - strand at 101.144 kb on + strand, within SMa0185 at 101.145 kb on - strand, within SMa0185 at 101.145 kb on - strand, within SMa0185 at 101.145 kb on - strand, within SMa0185 at 101.145 kb on - strand, within SMa0185 at 101.461 kb on - strand, within SMa0185 at 101.466 kb on - strand, within SMa0185 at 101.497 kb on + strand, within SMa0185 at 101.498 kb on - strand, within SMa0185 at 101.498 kb on - strand, within SMa0185 at 101.499 kb on + strand, within SMa0185 at 101.500 kb on - strand, within SMa0185 at 101.550 kb on - strand, within SMa0185 at 101.624 kb on + strand, within SMa0185 at 101.624 kb on + strand, within SMa0185 at 101.638 kb on + strand, within SMa0185 at 101.639 kb on - strand, within SMa0185 at 101.639 kb on - strand, within SMa0185 at 101.793 kb on + strand, within SMa0185 at 101.910 kb on + strand, within SMa0185 at 102.236 kb on + strand, within SMa0185 at 102.237 kb on - strand, within SMa0185 at 102.242 kb on - strand, within SMa0185 at 102.242 kb on - strand, within SMa0185 at 102.462 kb on + strand at 102.463 kb on - strand at 102.464 kb on + strand at 102.465 kb on - strand at 102.506 kb on + strand at 102.506 kb on + strand at 102.506 kb on + strand at 102.507 kb on - strand at 102.507 kb on - strand at 102.521 kb on + strand at 102.522 kb on - strand at 102.623 kb on + strand at 102.624 kb on - strand at 102.645 kb on - strand at 102.835 kb on + strand, within SMa0187 at 102.835 kb on + strand, within SMa0187 at 102.835 kb on + strand, within SMa0187 at 102.836 kb on - strand, within SMa0187 at 102.836 kb on - strand, within SMa0187 at 102.850 kb on + strand, within SMa0187 at 102.851 kb on - strand, within SMa0187 at 103.210 kb on + strand, within SMa0187 at 103.211 kb on - strand, within SMa0187 at 103.222 kb on + strand, within SMa0187 at 103.222 kb on + strand, within SMa0187 at 103.222 kb on + strand, within SMa0187 at 103.223 kb on - strand, within SMa0187 at 103.223 kb on - strand, within SMa0187 at 103.321 kb on + strand, within SMa0187 at 103.321 kb on + strand, within SMa0187 at 103.321 kb on + strand, within SMa0187 at 103.322 kb on - strand, within SMa0187 at 103.322 kb on - strand, within SMa0187 at 103.322 kb on - strand, within SMa0187
Per-strain Table
Position Strand Gene LocusTag Fraction LB, pH6 remove 100,035 + SMa0180 0.69 +2.0 100,036 - SMa0180 0.69 -0.6 100,041 + SMa0180 0.69 +0.2 100,041 + SMa0180 0.69 +0.3 100,042 - SMa0180 0.70 +0.0 100,042 - SMa0180 0.70 -0.6 100,042 - SMa0180 0.70 +0.6 100,042 - SMa0180 0.70 +0.1 100,042 - SMa0180 0.70 -0.1 100,042 - SMa0180 0.70 -0.7 100,350 + -0.1 100,477 - +0.4 100,566 + SMa0181 0.30 +1.6 100,566 + SMa0181 0.30 -0.4 100,703 - -0.7 100,711 + +0.2 100,711 + +1.4 100,755 - -0.2 100,755 - -0.1 100,793 - +0.0 100,793 - +0.1 100,814 + +0.2 100,814 + +0.5 100,815 - -1.8 101,144 + SMa0185 0.12 -0.4 101,145 - SMa0185 0.12 +1.2 101,145 - SMa0185 0.12 +1.4 101,145 - SMa0185 0.12 +0.0 101,145 - SMa0185 0.12 +0.2 101,461 - SMa0185 0.32 -0.6 101,466 - SMa0185 0.32 +0.0 101,497 + SMa0185 0.34 -0.6 101,498 - SMa0185 0.35 -1.1 101,498 - SMa0185 0.35 +0.4 101,499 + SMa0185 0.35 +0.8 101,500 - SMa0185 0.35 +1.0 101,550 - SMa0185 0.38 -0.9 101,624 + SMa0185 0.43 -0.8 101,624 + SMa0185 0.43 -0.3 101,638 + SMa0185 0.44 -0.9 101,639 - SMa0185 0.44 -1.0 101,639 - SMa0185 0.44 +0.4 101,793 + SMa0185 0.54 -0.5 101,910 + SMa0185 0.61 -0.6 102,236 + SMa0185 0.82 -2.1 102,237 - SMa0185 0.82 -0.5 102,242 - SMa0185 0.83 -0.0 102,242 - SMa0185 0.83 -0.6 102,462 + -0.5 102,463 - -0.7 102,464 + -0.4 102,465 - +0.7 102,506 + +1.5 102,506 + +0.9 102,506 + -0.7 102,507 - +0.1 102,507 - -0.3 102,521 + -0.2 102,522 - -0.7 102,623 + -1.2 102,624 - +0.3 102,645 - +0.6 102,835 + SMa0187 0.19 -1.4 102,835 + SMa0187 0.19 +1.1 102,835 + SMa0187 0.19 +0.0 102,836 - SMa0187 0.20 -1.0 102,836 - SMa0187 0.20 +2.0 102,850 + SMa0187 0.21 +0.2 102,851 - SMa0187 0.21 -0.4 103,210 + SMa0187 0.59 +1.0 103,211 - SMa0187 0.59 -0.0 103,222 + SMa0187 0.60 +0.8 103,222 + SMa0187 0.60 -0.3 103,222 + SMa0187 0.60 -0.5 103,223 - SMa0187 0.60 -0.7 103,223 - SMa0187 0.60 +0.9 103,321 + SMa0187 0.70 +0.0 103,321 + SMa0187 0.70 -1.1 103,321 + SMa0187 0.70 -1.2 103,322 - SMa0187 0.71 -0.4 103,322 - SMa0187 0.71 +0.1 103,322 - SMa0187 0.71 -2.2
Or see this region's nucleotide sequence