Strain Fitness in Sinorhizobium meliloti 1021 around SM_b21635

Experiment: LB, pH6

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b21633 and SM_b21634 are separated by 33 nucleotidesSM_b21634 and SM_b21635 overlap by 4 nucleotidesSM_b21635 and SM_b21636 are separated by 50 nucleotides SM_b21633: SM_b21633 - enoyl-CoA hydratase, at 1,661,661 to 1,662,452 _b21633 SM_b21634: SM_b21634 - acyl-CoA thioester hydrolase, at 1,662,486 to 1,662,989 _b21634 SM_b21635: SM_b21635 - bifunctional aldehyde dehydrogenase/enoyl-CoA hydratase, at 1,662,986 to 1,665,052 _b21635 SM_b21636: SM_b21636 - ferredoxin reductase electron transfer protein, at 1,665,103 to 1,666,179 _b21636 Position (kb) 1662 1663 1664 1665 1666Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 1662.393 kb on + strandat 1662.487 kb on + strandat 1662.664 kb on + strand, within SM_b21634at 1662.751 kb on + strand, within SM_b21634at 1662.751 kb on + strand, within SM_b21634at 1662.752 kb on - strand, within SM_b21634at 1662.839 kb on - strand, within SM_b21634at 1663.025 kb on + strandat 1663.025 kb on + strandat 1663.025 kb on + strandat 1663.025 kb on + strandat 1663.025 kb on + strandat 1663.026 kb on - strandat 1663.026 kb on - strandat 1663.026 kb on - strandat 1663.026 kb on - strandat 1663.026 kb on - strandat 1663.033 kb on - strandat 1663.159 kb on - strandat 1663.159 kb on - strandat 1663.195 kb on - strand, within SM_b21635at 1663.204 kb on - strand, within SM_b21635at 1663.260 kb on + strand, within SM_b21635at 1663.260 kb on + strand, within SM_b21635at 1663.333 kb on + strand, within SM_b21635at 1663.333 kb on + strand, within SM_b21635at 1663.334 kb on - strand, within SM_b21635at 1663.539 kb on + strand, within SM_b21635at 1663.540 kb on - strand, within SM_b21635at 1663.796 kb on - strand, within SM_b21635at 1663.800 kb on + strand, within SM_b21635at 1663.801 kb on - strand, within SM_b21635at 1663.875 kb on + strand, within SM_b21635at 1663.875 kb on + strand, within SM_b21635at 1664.288 kb on - strand, within SM_b21635at 1664.605 kb on + strand, within SM_b21635at 1664.606 kb on - strand, within SM_b21635at 1664.703 kb on + strand, within SM_b21635at 1664.784 kb on + strand, within SM_b21635at 1664.892 kb on + strandat 1664.892 kb on + strandat 1664.893 kb on - strandat 1664.893 kb on - strandat 1665.010 kb on + strandat 1665.012 kb on + strandat 1665.114 kb on - strandat 1665.165 kb on - strandat 1665.165 kb on - strandat 1665.182 kb on + strandat 1665.182 kb on + strandat 1665.183 kb on - strandat 1665.741 kb on - strand, within SM_b21636at 1665.741 kb on - strand, within SM_b21636at 1665.787 kb on + strand, within SM_b21636at 1666.011 kb on - strand, within SM_b21636

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Per-strain Table

Position Strand Gene LocusTag Fraction LB, pH6
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1,662,393 + -0.0
1,662,487 + +0.9
1,662,664 + SM_b21634 0.35 -1.0
1,662,751 + SM_b21634 0.53 -1.2
1,662,751 + SM_b21634 0.53 +0.5
1,662,752 - SM_b21634 0.53 -1.2
1,662,839 - SM_b21634 0.70 -0.2
1,663,025 + -0.7
1,663,025 + +0.0
1,663,025 + +0.5
1,663,025 + -0.5
1,663,025 + +1.4
1,663,026 - -0.8
1,663,026 - +0.2
1,663,026 - +1.2
1,663,026 - +0.2
1,663,026 - -1.6
1,663,033 - +0.7
1,663,159 - -0.2
1,663,159 - -1.9
1,663,195 - SM_b21635 0.10 -1.6
1,663,204 - SM_b21635 0.11 +0.8
1,663,260 + SM_b21635 0.13 -0.2
1,663,260 + SM_b21635 0.13 -0.4
1,663,333 + SM_b21635 0.17 +0.3
1,663,333 + SM_b21635 0.17 -0.3
1,663,334 - SM_b21635 0.17 -0.8
1,663,539 + SM_b21635 0.27 -0.8
1,663,540 - SM_b21635 0.27 +0.1
1,663,796 - SM_b21635 0.39 -0.8
1,663,800 + SM_b21635 0.39 -0.0
1,663,801 - SM_b21635 0.39 -2.1
1,663,875 + SM_b21635 0.43 +0.5
1,663,875 + SM_b21635 0.43 -0.5
1,664,288 - SM_b21635 0.63 -0.8
1,664,605 + SM_b21635 0.78 -0.1
1,664,606 - SM_b21635 0.78 +1.7
1,664,703 + SM_b21635 0.83 +0.4
1,664,784 + SM_b21635 0.87 -0.5
1,664,892 + -0.1
1,664,892 + +1.9
1,664,893 - -0.5
1,664,893 - +0.7
1,665,010 + -0.1
1,665,012 + +4.3
1,665,114 - +0.5
1,665,165 - +0.3
1,665,165 - +1.5
1,665,182 + -0.9
1,665,182 + -1.3
1,665,183 - -1.0
1,665,741 - SM_b21636 0.59 -0.0
1,665,741 - SM_b21636 0.59 -0.2
1,665,787 + SM_b21636 0.64 -0.1
1,666,011 - SM_b21636 0.84 +1.3

Or see this region's nucleotide sequence