Experiment: LB, pH6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21455 and SM_b21456 are separated by 283 nucleotides SM_b21456 and SM_b21458 are separated by 144 nucleotides SM_b21458 and SM_b21459 are separated by 11 nucleotides SM_b21459 and SM_b21460 overlap by 4 nucleotides
SM_b21455: SM_b21455 - hypothetical protein, at 1,382,140 to 1,383,507
_b21455
SM_b21456: SM_b21456 - hypothetical protein, at 1,383,791 to 1,384,228
_b21456
SM_b21458: SM_b21458 - sugar uptake ABC transporter permease, at 1,384,373 to 1,385,248
_b21458
SM_b21459: SM_b21459 - sugar uptake ABC transporter permease, at 1,385,260 to 1,386,153
_b21459
SM_b21460: SM_b21460 - sugar uptake ABC transporter ATP-binding protein, at 1,386,150 to 1,387,262
_b21460
Position (kb)
1384
1385
1386 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 1383.374 kb on + strand at 1383.374 kb on + strand at 1383.374 kb on + strand at 1383.374 kb on + strand at 1383.375 kb on - strand at 1383.375 kb on - strand at 1383.375 kb on - strand at 1383.375 kb on - strand at 1383.375 kb on - strand at 1383.554 kb on + strand at 1383.554 kb on + strand at 1383.554 kb on + strand at 1383.560 kb on - strand at 1383.645 kb on - strand at 1383.645 kb on - strand at 1383.842 kb on + strand, within SM_b21456 at 1383.906 kb on + strand, within SM_b21456 at 1383.907 kb on - strand, within SM_b21456 at 1383.919 kb on + strand, within SM_b21456 at 1383.920 kb on - strand, within SM_b21456 at 1383.920 kb on - strand, within SM_b21456 at 1383.920 kb on - strand, within SM_b21456 at 1383.920 kb on - strand, within SM_b21456 at 1383.920 kb on - strand at 1383.923 kb on + strand, within SM_b21456 at 1383.923 kb on + strand, within SM_b21456 at 1383.924 kb on - strand, within SM_b21456 at 1383.924 kb on - strand, within SM_b21456 at 1383.966 kb on + strand, within SM_b21456 at 1383.966 kb on + strand, within SM_b21456 at 1383.966 kb on + strand, within SM_b21456 at 1384.071 kb on + strand, within SM_b21456 at 1384.071 kb on + strand, within SM_b21456 at 1384.072 kb on - strand, within SM_b21456 at 1384.072 kb on - strand, within SM_b21456 at 1384.203 kb on - strand at 1384.239 kb on + strand at 1384.250 kb on + strand at 1384.250 kb on + strand at 1384.276 kb on + strand at 1384.326 kb on + strand at 1384.327 kb on - strand at 1384.753 kb on + strand, within SM_b21458 at 1384.753 kb on + strand, within SM_b21458 at 1384.754 kb on - strand, within SM_b21458 at 1384.777 kb on - strand, within SM_b21458 at 1384.806 kb on + strand, within SM_b21458 at 1384.806 kb on + strand, within SM_b21458 at 1384.933 kb on - strand, within SM_b21458 at 1385.122 kb on - strand, within SM_b21458 at 1385.139 kb on + strand, within SM_b21458 at 1385.139 kb on + strand, within SM_b21458 at 1385.140 kb on - strand, within SM_b21458 at 1385.183 kb on + strand at 1385.183 kb on + strand at 1385.203 kb on - strand at 1385.394 kb on - strand, within SM_b21459 at 1385.438 kb on + strand, within SM_b21459 at 1385.439 kb on - strand, within SM_b21459 at 1385.521 kb on + strand, within SM_b21459 at 1385.906 kb on - strand, within SM_b21459 at 1386.103 kb on + strand at 1386.104 kb on - strand at 1386.104 kb on - strand at 1386.223 kb on + strand at 1386.223 kb on + strand at 1386.224 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB, pH6 remove 1,383,374 + -1.6 1,383,374 + +0.8 1,383,374 + -0.3 1,383,374 + -0.3 1,383,375 - +0.6 1,383,375 - -0.1 1,383,375 - -0.0 1,383,375 - +0.1 1,383,375 - -0.6 1,383,554 + -1.8 1,383,554 + +0.2 1,383,554 + -0.4 1,383,560 - +0.2 1,383,645 - +1.3 1,383,645 - -0.7 1,383,842 + SM_b21456 0.12 +0.5 1,383,906 + SM_b21456 0.26 -0.8 1,383,907 - SM_b21456 0.26 +0.5 1,383,919 + SM_b21456 0.29 -2.6 1,383,920 - SM_b21456 0.29 -0.3 1,383,920 - SM_b21456 0.29 -0.5 1,383,920 - SM_b21456 0.29 -0.1 1,383,920 - SM_b21456 0.29 +0.6 1,383,920 - +1.0 1,383,923 + SM_b21456 0.30 +0.2 1,383,923 + SM_b21456 0.30 -1.2 1,383,924 - SM_b21456 0.30 +1.3 1,383,924 - SM_b21456 0.30 -0.1 1,383,966 + SM_b21456 0.40 +0.0 1,383,966 + SM_b21456 0.40 +0.2 1,383,966 + SM_b21456 0.40 -0.7 1,384,071 + SM_b21456 0.64 -0.6 1,384,071 + SM_b21456 0.64 +0.6 1,384,072 - SM_b21456 0.64 +0.6 1,384,072 - SM_b21456 0.64 +0.6 1,384,203 - +0.1 1,384,239 + +0.4 1,384,250 + -0.1 1,384,250 + -0.4 1,384,276 + -0.1 1,384,326 + -1.6 1,384,327 - -0.2 1,384,753 + SM_b21458 0.43 +1.1 1,384,753 + SM_b21458 0.43 -0.0 1,384,754 - SM_b21458 0.43 +0.6 1,384,777 - SM_b21458 0.46 -0.1 1,384,806 + SM_b21458 0.49 +4.0 1,384,806 + SM_b21458 0.49 +1.0 1,384,933 - SM_b21458 0.64 -2.7 1,385,122 - SM_b21458 0.86 +0.3 1,385,139 + SM_b21458 0.87 +0.4 1,385,139 + SM_b21458 0.87 +0.5 1,385,140 - SM_b21458 0.88 -2.2 1,385,183 + +0.3 1,385,183 + +0.2 1,385,203 - -0.0 1,385,394 - SM_b21459 0.15 -0.4 1,385,438 + SM_b21459 0.20 +0.6 1,385,439 - SM_b21459 0.20 +0.7 1,385,521 + SM_b21459 0.29 -0.3 1,385,906 - SM_b21459 0.72 +0.8 1,386,103 + +0.9 1,386,104 - +0.4 1,386,104 - +1.2 1,386,223 + -0.5 1,386,223 + -0.3 1,386,224 - -0.4
Or see this region's nucleotide sequence