Experiment: LB, pH6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21184 and SM_b21185 are separated by 36 nucleotides SM_b21185 and SM_b21186 are separated by 115 nucleotides
SM_b21184: SM_b21184 - acetate kinase, at 932,547 to 933,725
_b21184
SM_b21185: SM_b21185 - succinate-semialdehyde dehydrogenase (NAD(P)+) protein, at 933,762 to 935,237
_b21185
SM_b21186: SM_b21186 - 4-aminobutyrate aminotransferase, at 935,353 to 936,621
_b21186
Position (kb) 933
934
935
936 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 932.842 kb on - strand, within SM_b21184 at 933.030 kb on + strand, within SM_b21184 at 933.031 kb on - strand, within SM_b21184 at 933.051 kb on + strand, within SM_b21184 at 933.051 kb on + strand, within SM_b21184 at 933.051 kb on + strand, within SM_b21184 at 933.052 kb on - strand, within SM_b21184 at 933.099 kb on + strand, within SM_b21184 at 933.099 kb on + strand, within SM_b21184 at 933.099 kb on + strand, within SM_b21184 at 933.100 kb on - strand, within SM_b21184 at 933.100 kb on - strand, within SM_b21184 at 933.100 kb on - strand, within SM_b21184 at 933.100 kb on - strand, within SM_b21184 at 933.101 kb on + strand, within SM_b21184 at 933.101 kb on + strand, within SM_b21184 at 933.314 kb on + strand, within SM_b21184 at 933.314 kb on + strand, within SM_b21184 at 933.314 kb on + strand, within SM_b21184 at 933.524 kb on + strand, within SM_b21184 at 933.699 kb on - strand at 933.741 kb on + strand at 933.741 kb on + strand at 933.741 kb on + strand at 933.784 kb on + strand at 933.785 kb on - strand at 933.799 kb on + strand at 933.799 kb on + strand at 933.800 kb on - strand at 933.800 kb on - strand at 933.891 kb on - strand at 933.979 kb on + strand, within SM_b21185 at 933.979 kb on + strand, within SM_b21185 at 933.979 kb on + strand, within SM_b21185 at 933.980 kb on - strand, within SM_b21185 at 933.980 kb on - strand, within SM_b21185 at 933.987 kb on - strand, within SM_b21185 at 934.095 kb on - strand, within SM_b21185 at 934.170 kb on + strand, within SM_b21185 at 934.327 kb on + strand, within SM_b21185 at 934.327 kb on + strand, within SM_b21185 at 934.328 kb on - strand, within SM_b21185 at 934.588 kb on + strand, within SM_b21185 at 934.589 kb on - strand, within SM_b21185 at 934.770 kb on + strand, within SM_b21185 at 934.800 kb on - strand, within SM_b21185 at 934.800 kb on - strand, within SM_b21185 at 934.873 kb on + strand, within SM_b21185 at 934.873 kb on + strand, within SM_b21185 at 934.874 kb on - strand, within SM_b21185 at 934.874 kb on - strand, within SM_b21185 at 935.103 kb on + strand at 935.104 kb on - strand at 935.283 kb on + strand at 935.283 kb on + strand at 935.284 kb on - strand at 935.284 kb on - strand at 935.385 kb on + strand at 935.739 kb on - strand, within SM_b21186 at 935.739 kb on - strand, within SM_b21186 at 935.739 kb on - strand, within SM_b21186 at 935.987 kb on + strand, within SM_b21186 at 936.168 kb on - strand, within SM_b21186 at 936.168 kb on - strand, within SM_b21186 at 936.168 kb on - strand, within SM_b21186
Per-strain Table
Position Strand Gene LocusTag Fraction LB, pH6 remove 932,842 - SM_b21184 0.25 +0.5 933,030 + SM_b21184 0.41 -0.3 933,031 - SM_b21184 0.41 +1.3 933,051 + SM_b21184 0.43 +0.7 933,051 + SM_b21184 0.43 -2.1 933,051 + SM_b21184 0.43 -0.1 933,052 - SM_b21184 0.43 +1.0 933,099 + SM_b21184 0.47 +1.1 933,099 + SM_b21184 0.47 +0.2 933,099 + SM_b21184 0.47 +0.6 933,100 - SM_b21184 0.47 +0.8 933,100 - SM_b21184 0.47 -1.0 933,100 - SM_b21184 0.47 -0.2 933,100 - SM_b21184 0.47 -1.2 933,101 + SM_b21184 0.47 -0.3 933,101 + SM_b21184 0.47 -0.2 933,314 + SM_b21184 0.65 -1.2 933,314 + SM_b21184 0.65 -0.8 933,314 + SM_b21184 0.65 -0.9 933,524 + SM_b21184 0.83 -0.3 933,699 - -0.0 933,741 + -0.2 933,741 + -1.6 933,741 + -0.1 933,784 + +1.2 933,785 - +0.6 933,799 + -0.8 933,799 + +0.0 933,800 - -0.3 933,800 - -0.5 933,891 - +0.3 933,979 + SM_b21185 0.15 -1.2 933,979 + SM_b21185 0.15 -1.7 933,979 + SM_b21185 0.15 -0.4 933,980 - SM_b21185 0.15 -0.2 933,980 - SM_b21185 0.15 -1.5 933,987 - SM_b21185 0.15 -1.6 934,095 - SM_b21185 0.23 +0.5 934,170 + SM_b21185 0.28 -0.4 934,327 + SM_b21185 0.38 -0.4 934,327 + SM_b21185 0.38 +0.7 934,328 - SM_b21185 0.38 -0.1 934,588 + SM_b21185 0.56 -1.3 934,589 - SM_b21185 0.56 -0.1 934,770 + SM_b21185 0.68 -1.9 934,800 - SM_b21185 0.70 +2.9 934,800 - SM_b21185 0.70 +0.5 934,873 + SM_b21185 0.75 -0.6 934,873 + SM_b21185 0.75 +0.3 934,874 - SM_b21185 0.75 -0.4 934,874 - SM_b21185 0.75 -0.2 935,103 + -0.9 935,104 - +0.3 935,283 + -0.6 935,283 + +0.9 935,284 - -1.4 935,284 - +0.1 935,385 + -0.9 935,739 - SM_b21186 0.30 -0.4 935,739 - SM_b21186 0.30 +0.1 935,739 - SM_b21186 0.30 -1.5 935,987 + SM_b21186 0.50 -0.9 936,168 - SM_b21186 0.64 +0.3 936,168 - SM_b21186 0.64 -0.4 936,168 - SM_b21186 0.64 -0.2
Or see this region's nucleotide sequence