Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20865

Experiment: LB, pH6

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20863 and SM_b20864 are separated by 72 nucleotidesSM_b20864 and SM_b20865 are separated by 63 nucleotidesSM_b20865 and SM_b20866 are separated by 146 nucleotides SM_b20863: SM_b20863 - hypothetical protein, at 1,268,306 to 1,269,337 _b20863 SM_b20864: SM_b20864 - hypothetical protein, at 1,269,410 to 1,269,835 _b20864 SM_b20865: SM_b20865 - hypothetical protein, at 1,269,899 to 1,270,651 _b20865 SM_b20866: SM_b20866 - hypothetical protein, at 1,270,798 to 1,271,715 _b20866 Position (kb) 1269 1270 1271Strain fitness (log2 ratio) -2 -1 0 1 2at 1268.903 kb on - strand, within SM_b20863at 1268.964 kb on - strand, within SM_b20863at 1268.988 kb on + strand, within SM_b20863at 1268.989 kb on - strand, within SM_b20863at 1269.008 kb on - strand, within SM_b20863at 1269.054 kb on + strand, within SM_b20863at 1269.055 kb on - strand, within SM_b20863at 1269.186 kb on + strand, within SM_b20863at 1269.187 kb on - strand, within SM_b20863at 1269.187 kb on - strand, within SM_b20863at 1269.187 kb on - strand, within SM_b20863at 1269.406 kb on + strandat 1269.407 kb on - strandat 1269.411 kb on + strandat 1269.411 kb on + strandat 1269.412 kb on - strandat 1269.412 kb on - strandat 1269.488 kb on - strand, within SM_b20864at 1269.555 kb on + strand, within SM_b20864at 1269.555 kb on + strand, within SM_b20864at 1269.555 kb on + strand, within SM_b20864at 1269.556 kb on - strand, within SM_b20864at 1269.556 kb on - strand, within SM_b20864at 1269.563 kb on - strand, within SM_b20864at 1269.615 kb on + strand, within SM_b20864at 1269.616 kb on - strand, within SM_b20864at 1269.640 kb on + strand, within SM_b20864at 1269.640 kb on + strand, within SM_b20864at 1269.640 kb on + strand, within SM_b20864at 1269.640 kb on + strand, within SM_b20864at 1269.641 kb on - strand, within SM_b20864at 1269.641 kb on - strand, within SM_b20864at 1269.641 kb on - strand, within SM_b20864at 1269.641 kb on - strand, within SM_b20864at 1269.641 kb on - strand, within SM_b20864at 1269.641 kb on - strand, within SM_b20864at 1269.641 kb on - strand, within SM_b20864at 1269.670 kb on - strand, within SM_b20864at 1269.792 kb on - strand, within SM_b20864at 1269.877 kb on + strandat 1269.878 kb on - strandat 1269.901 kb on - strandat 1270.234 kb on + strand, within SM_b20865at 1270.276 kb on + strand, within SM_b20865at 1270.276 kb on + strand, within SM_b20865at 1270.277 kb on - strand, within SM_b20865at 1270.277 kb on - strand, within SM_b20865at 1270.277 kb on - strand, within SM_b20865at 1270.277 kb on - strand, within SM_b20865at 1270.279 kb on - strand, within SM_b20865at 1270.283 kb on + strand, within SM_b20865at 1270.284 kb on - strand, within SM_b20865at 1270.333 kb on - strand, within SM_b20865at 1270.489 kb on + strand, within SM_b20865at 1270.678 kb on - strandat 1270.678 kb on - strandat 1270.696 kb on + strandat 1270.802 kb on + strandat 1270.802 kb on + strandat 1270.803 kb on - strandat 1270.876 kb on - strandat 1271.073 kb on + strand, within SM_b20866at 1271.150 kb on + strand, within SM_b20866at 1271.347 kb on + strand, within SM_b20866at 1271.348 kb on - strand, within SM_b20866at 1271.348 kb on - strand, within SM_b20866at 1271.348 kb on - strand, within SM_b20866at 1271.419 kb on + strand, within SM_b20866at 1271.599 kb on + strand, within SM_b20866at 1271.600 kb on - strand, within SM_b20866

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Per-strain Table

Position Strand Gene LocusTag Fraction LB, pH6
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1,268,903 - SM_b20863 0.58 -0.2
1,268,964 - SM_b20863 0.64 +0.7
1,268,988 + SM_b20863 0.66 -0.1
1,268,989 - SM_b20863 0.66 -1.6
1,269,008 - SM_b20863 0.68 -0.3
1,269,054 + SM_b20863 0.72 +1.0
1,269,055 - SM_b20863 0.73 +0.1
1,269,186 + SM_b20863 0.85 -0.0
1,269,187 - SM_b20863 0.85 -0.2
1,269,187 - SM_b20863 0.85 -0.9
1,269,187 - SM_b20863 0.85 +0.3
1,269,406 + +0.4
1,269,407 - +0.9
1,269,411 + -1.1
1,269,411 + +0.0
1,269,412 - -0.3
1,269,412 - +0.1
1,269,488 - SM_b20864 0.18 +0.9
1,269,555 + SM_b20864 0.34 -0.9
1,269,555 + SM_b20864 0.34 -0.2
1,269,555 + SM_b20864 0.34 -0.6
1,269,556 - SM_b20864 0.34 -1.8
1,269,556 - SM_b20864 0.34 -1.5
1,269,563 - SM_b20864 0.36 -1.9
1,269,615 + SM_b20864 0.48 +1.4
1,269,616 - SM_b20864 0.48 -0.2
1,269,640 + SM_b20864 0.54 -0.6
1,269,640 + SM_b20864 0.54 -1.2
1,269,640 + SM_b20864 0.54 +0.2
1,269,640 + SM_b20864 0.54 +0.0
1,269,641 - SM_b20864 0.54 +0.1
1,269,641 - SM_b20864 0.54 -0.6
1,269,641 - SM_b20864 0.54 +0.3
1,269,641 - SM_b20864 0.54 +0.1
1,269,641 - SM_b20864 0.54 +0.5
1,269,641 - SM_b20864 0.54 -0.0
1,269,641 - SM_b20864 0.54 +2.0
1,269,670 - SM_b20864 0.61 -0.6
1,269,792 - SM_b20864 0.90 +0.7
1,269,877 + -0.4
1,269,878 - -0.7
1,269,901 - +0.4
1,270,234 + SM_b20865 0.44 +0.2
1,270,276 + SM_b20865 0.50 -0.3
1,270,276 + SM_b20865 0.50 +0.2
1,270,277 - SM_b20865 0.50 -0.5
1,270,277 - SM_b20865 0.50 +2.1
1,270,277 - SM_b20865 0.50 +1.5
1,270,277 - SM_b20865 0.50 +0.4
1,270,279 - SM_b20865 0.50 -0.4
1,270,283 + SM_b20865 0.51 +0.5
1,270,284 - SM_b20865 0.51 -0.8
1,270,333 - SM_b20865 0.58 -0.4
1,270,489 + SM_b20865 0.78 +0.1
1,270,678 - -0.4
1,270,678 - +0.3
1,270,696 + -0.6
1,270,802 + -0.6
1,270,802 + -0.4
1,270,803 - -0.9
1,270,876 - +0.6
1,271,073 + SM_b20866 0.30 +0.9
1,271,150 + SM_b20866 0.38 -0.1
1,271,347 + SM_b20866 0.60 +1.6
1,271,348 - SM_b20866 0.60 +0.8
1,271,348 - SM_b20866 0.60 -0.2
1,271,348 - SM_b20866 0.60 +1.6
1,271,419 + SM_b20866 0.68 +0.4
1,271,599 + SM_b20866 0.87 +0.9
1,271,600 - SM_b20866 0.87 +1.4

Or see this region's nucleotide sequence