Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20755

Experiment: LB, pH6

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20754 and SM_b20755 are separated by 96 nucleotidesSM_b20755 and SM_b20756 are separated by 12 nucleotides SM_b20754: SM_b20754 - hypothetical protein, at 1,543,624 to 1,545,099 _b20754 SM_b20755: SM_b20755 - propionyl-CoA carboxylase subunit beta, at 1,545,196 to 1,546,728 _b20755 SM_b20756: SM_b20756 - propionyl-CoA carboxylase subunit alpha, at 1,546,741 to 1,548,753 _b20756 Position (kb) 1545 1546 1547Strain fitness (log2 ratio) -2 -1 0 1 2at 1544.213 kb on + strand, within SM_b20754at 1544.240 kb on + strand, within SM_b20754at 1544.240 kb on + strand, within SM_b20754at 1544.271 kb on - strand, within SM_b20754at 1544.271 kb on - strand, within SM_b20754at 1544.271 kb on - strand, within SM_b20754at 1544.402 kb on - strand, within SM_b20754at 1544.464 kb on + strand, within SM_b20754at 1544.487 kb on - strand, within SM_b20754at 1544.573 kb on + strand, within SM_b20754at 1544.573 kb on + strand, within SM_b20754at 1544.574 kb on - strand, within SM_b20754at 1544.574 kb on - strand, within SM_b20754at 1544.574 kb on - strand, within SM_b20754at 1544.574 kb on - strand, within SM_b20754at 1544.612 kb on + strand, within SM_b20754at 1544.690 kb on + strand, within SM_b20754at 1544.774 kb on + strand, within SM_b20754at 1544.774 kb on + strand, within SM_b20754at 1544.936 kb on + strand, within SM_b20754at 1544.936 kb on + strand, within SM_b20754at 1545.022 kb on - strandat 1545.023 kb on + strandat 1545.023 kb on + strandat 1545.024 kb on - strandat 1545.024 kb on - strandat 1545.143 kb on - strandat 1545.206 kb on + strandat 1545.355 kb on + strand, within SM_b20755at 1545.355 kb on + strand, within SM_b20755at 1545.355 kb on + strand, within SM_b20755at 1545.356 kb on - strand, within SM_b20755at 1545.356 kb on - strand, within SM_b20755at 1545.713 kb on - strand, within SM_b20755at 1545.713 kb on - strand, within SM_b20755at 1545.735 kb on + strand, within SM_b20755at 1545.736 kb on - strand, within SM_b20755at 1545.760 kb on + strand, within SM_b20755at 1545.760 kb on + strand, within SM_b20755at 1545.761 kb on - strand, within SM_b20755at 1546.011 kb on - strand, within SM_b20755at 1546.036 kb on + strand, within SM_b20755at 1546.037 kb on - strand, within SM_b20755at 1546.351 kb on + strand, within SM_b20755at 1546.352 kb on - strand, within SM_b20755at 1546.352 kb on - strand, within SM_b20755at 1546.399 kb on + strand, within SM_b20755at 1546.400 kb on - strand, within SM_b20755at 1546.411 kb on + strand, within SM_b20755at 1546.453 kb on + strand, within SM_b20755at 1546.453 kb on + strand, within SM_b20755at 1546.454 kb on - strand, within SM_b20755at 1546.454 kb on - strand, within SM_b20755at 1546.513 kb on + strand, within SM_b20755at 1546.514 kb on - strand, within SM_b20755at 1546.614 kb on - strandat 1546.928 kb on - strandat 1546.928 kb on - strandat 1546.928 kb on - strandat 1546.944 kb on + strand, within SM_b20756at 1547.152 kb on - strand, within SM_b20756at 1547.152 kb on - strand, within SM_b20756at 1547.410 kb on - strand, within SM_b20756at 1547.416 kb on + strand, within SM_b20756at 1547.416 kb on + strand, within SM_b20756at 1547.417 kb on - strand, within SM_b20756at 1547.417 kb on - strand, within SM_b20756

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Per-strain Table

Position Strand Gene LocusTag Fraction LB, pH6
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1,544,213 + SM_b20754 0.40 +0.3
1,544,240 + SM_b20754 0.42 -0.7
1,544,240 + SM_b20754 0.42 -0.4
1,544,271 - SM_b20754 0.44 +0.1
1,544,271 - SM_b20754 0.44 -0.5
1,544,271 - SM_b20754 0.44 +0.1
1,544,402 - SM_b20754 0.53 +0.6
1,544,464 + SM_b20754 0.57 +0.9
1,544,487 - SM_b20754 0.58 +0.5
1,544,573 + SM_b20754 0.64 -0.3
1,544,573 + SM_b20754 0.64 -0.5
1,544,574 - SM_b20754 0.64 +0.5
1,544,574 - SM_b20754 0.64 -0.4
1,544,574 - SM_b20754 0.64 -0.7
1,544,574 - SM_b20754 0.64 +0.3
1,544,612 + SM_b20754 0.67 -0.2
1,544,690 + SM_b20754 0.72 -1.5
1,544,774 + SM_b20754 0.78 -0.3
1,544,774 + SM_b20754 0.78 +1.0
1,544,936 + SM_b20754 0.89 -1.0
1,544,936 + SM_b20754 0.89 -1.0
1,545,022 - -0.3
1,545,023 + +0.3
1,545,023 + +2.3
1,545,024 - +0.3
1,545,024 - +0.1
1,545,143 - -2.6
1,545,206 + +1.8
1,545,355 + SM_b20755 0.10 -0.1
1,545,355 + SM_b20755 0.10 +2.2
1,545,355 + SM_b20755 0.10 +0.4
1,545,356 - SM_b20755 0.10 +0.5
1,545,356 - SM_b20755 0.10 -0.8
1,545,713 - SM_b20755 0.34 +0.7
1,545,713 - SM_b20755 0.34 +1.4
1,545,735 + SM_b20755 0.35 -0.3
1,545,736 - SM_b20755 0.35 +0.3
1,545,760 + SM_b20755 0.37 -0.3
1,545,760 + SM_b20755 0.37 +0.6
1,545,761 - SM_b20755 0.37 -0.3
1,546,011 - SM_b20755 0.53 +0.9
1,546,036 + SM_b20755 0.55 -0.7
1,546,037 - SM_b20755 0.55 -0.6
1,546,351 + SM_b20755 0.75 +0.3
1,546,352 - SM_b20755 0.75 +0.3
1,546,352 - SM_b20755 0.75 -0.8
1,546,399 + SM_b20755 0.78 -0.1
1,546,400 - SM_b20755 0.79 +1.6
1,546,411 + SM_b20755 0.79 +0.2
1,546,453 + SM_b20755 0.82 -0.5
1,546,453 + SM_b20755 0.82 +0.5
1,546,454 - SM_b20755 0.82 +0.5
1,546,454 - SM_b20755 0.82 +0.5
1,546,513 + SM_b20755 0.86 +0.7
1,546,514 - SM_b20755 0.86 -0.0
1,546,614 - -0.4
1,546,928 - -0.0
1,546,928 - +0.2
1,546,928 - +0.5
1,546,944 + SM_b20756 0.10 -0.5
1,547,152 - SM_b20756 0.20 +0.6
1,547,152 - SM_b20756 0.20 +0.4
1,547,410 - SM_b20756 0.33 +0.3
1,547,416 + SM_b20756 0.34 -0.1
1,547,416 + SM_b20756 0.34 -0.7
1,547,417 - SM_b20756 0.34 +0.9
1,547,417 - SM_b20756 0.34 +2.0

Or see this region's nucleotide sequence