Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20478

Experiment: LB, pH6

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20477 and SM_b20478 overlap by 4 nucleotidesSM_b20478 and SM_b20479 overlap by 4 nucleotidesSM_b20479 and SM_b20480 are separated by 6 nucleotides SM_b20477: SM_b20477 - peptide ABC transporter permease, at 490,466 to 491,413 _b20477 SM_b20478: SM_b20478 - dipeptide ABC transporter permease and ATP-binding protein, at 491,410 to 493,212 _b20478 SM_b20479: SM_b20479 - dipeptide ABC transporter ATP-binding protein, at 493,209 to 494,006 _b20479 SM_b20480: SM_b20480 - transcriptional regulator, at 494,013 to 494,795 _b20480 Position (kb) 491 492 493 494Strain fitness (log2 ratio) -2 -1 0 1 2at 490.462 kb on - strandat 490.475 kb on + strandat 490.476 kb on - strandat 490.476 kb on - strandat 490.589 kb on + strand, within SM_b20477at 490.590 kb on - strand, within SM_b20477at 490.922 kb on + strand, within SM_b20477at 490.922 kb on + strand, within SM_b20477at 490.923 kb on - strand, within SM_b20477at 490.923 kb on - strand, within SM_b20477at 490.923 kb on - strand, within SM_b20477at 490.967 kb on + strand, within SM_b20477at 490.967 kb on + strand, within SM_b20477at 490.967 kb on + strand, within SM_b20477at 490.968 kb on - strand, within SM_b20477at 490.968 kb on - strand, within SM_b20477at 491.058 kb on + strand, within SM_b20477at 491.059 kb on - strand, within SM_b20477at 491.059 kb on - strand, within SM_b20477at 491.105 kb on + strand, within SM_b20477at 491.105 kb on + strand, within SM_b20477at 491.105 kb on + strand, within SM_b20477at 491.105 kb on + strand, within SM_b20477at 491.105 kb on + strand, within SM_b20477at 491.105 kb on + strand, within SM_b20477at 491.105 kb on + strand, within SM_b20477at 491.106 kb on - strand, within SM_b20477at 491.106 kb on - strand, within SM_b20477at 491.154 kb on - strand, within SM_b20477at 491.317 kb on - strand, within SM_b20477at 491.348 kb on + strandat 491.348 kb on + strandat 491.348 kb on + strandat 491.349 kb on - strandat 491.654 kb on + strand, within SM_b20478at 491.655 kb on - strand, within SM_b20478at 491.655 kb on - strand, within SM_b20478at 491.821 kb on + strand, within SM_b20478at 491.882 kb on - strand, within SM_b20478at 491.902 kb on - strand, within SM_b20478at 492.003 kb on + strand, within SM_b20478at 492.004 kb on - strand, within SM_b20478at 492.004 kb on - strand, within SM_b20478at 492.584 kb on + strand, within SM_b20478at 492.585 kb on - strand, within SM_b20478at 492.637 kb on + strand, within SM_b20478at 492.637 kb on + strand, within SM_b20478at 492.637 kb on + strand, within SM_b20478at 492.638 kb on - strand, within SM_b20478at 492.677 kb on - strand, within SM_b20478at 492.808 kb on + strand, within SM_b20478at 492.809 kb on - strand, within SM_b20478at 493.082 kb on + strandat 493.106 kb on - strandat 493.295 kb on - strand, within SM_b20479at 493.295 kb on - strand, within SM_b20479at 493.497 kb on + strand, within SM_b20479at 493.497 kb on + strand, within SM_b20479at 493.497 kb on + strand, within SM_b20479at 493.497 kb on + strand, within SM_b20479at 493.497 kb on + strand, within SM_b20479at 493.498 kb on - strand, within SM_b20479at 493.498 kb on - strand, within SM_b20479at 493.498 kb on - strand, within SM_b20479at 493.498 kb on - strand, within SM_b20479at 493.498 kb on - strand, within SM_b20479at 493.649 kb on + strand, within SM_b20479at 493.833 kb on + strand, within SM_b20479at 493.833 kb on + strand, within SM_b20479at 493.834 kb on - strand, within SM_b20479at 493.834 kb on - strand, within SM_b20479at 493.896 kb on + strand, within SM_b20479at 493.897 kb on - strand, within SM_b20479at 493.959 kb on + strandat 493.959 kb on + strandat 493.960 kb on - strandat 493.962 kb on - strandat 494.084 kb on + strandat 494.085 kb on - strandat 494.128 kb on - strand, within SM_b20480

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Per-strain Table

Position Strand Gene LocusTag Fraction LB, pH6
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490,462 - -0.6
490,475 + +0.8
490,476 - +0.5
490,476 - -1.4
490,589 + SM_b20477 0.13 +0.9
490,590 - SM_b20477 0.13 +0.1
490,922 + SM_b20477 0.48 +0.4
490,922 + SM_b20477 0.48 +1.7
490,923 - SM_b20477 0.48 -0.5
490,923 - SM_b20477 0.48 +0.4
490,923 - SM_b20477 0.48 +0.4
490,967 + SM_b20477 0.53 -1.6
490,967 + SM_b20477 0.53 -2.0
490,967 + SM_b20477 0.53 -0.2
490,968 - SM_b20477 0.53 -1.2
490,968 - SM_b20477 0.53 -1.3
491,058 + SM_b20477 0.62 -0.4
491,059 - SM_b20477 0.63 +0.2
491,059 - SM_b20477 0.63 +0.8
491,105 + SM_b20477 0.67 -1.3
491,105 + SM_b20477 0.67 -0.5
491,105 + SM_b20477 0.67 -0.3
491,105 + SM_b20477 0.67 +1.1
491,105 + SM_b20477 0.67 -0.7
491,105 + SM_b20477 0.67 -0.6
491,105 + SM_b20477 0.67 -1.5
491,106 - SM_b20477 0.68 +0.9
491,106 - SM_b20477 0.68 -1.0
491,154 - SM_b20477 0.73 +0.3
491,317 - SM_b20477 0.90 -0.1
491,348 + +0.3
491,348 + +0.6
491,348 + -1.5
491,349 - -0.6
491,654 + SM_b20478 0.14 -0.1
491,655 - SM_b20478 0.14 -1.3
491,655 - SM_b20478 0.14 -0.5
491,821 + SM_b20478 0.23 -0.6
491,882 - SM_b20478 0.26 -0.7
491,902 - SM_b20478 0.27 -0.7
492,003 + SM_b20478 0.33 -0.1
492,004 - SM_b20478 0.33 -0.4
492,004 - SM_b20478 0.33 -0.9
492,584 + SM_b20478 0.65 +0.0
492,585 - SM_b20478 0.65 +0.7
492,637 + SM_b20478 0.68 +0.2
492,637 + SM_b20478 0.68 +0.3
492,637 + SM_b20478 0.68 +1.2
492,638 - SM_b20478 0.68 -0.3
492,677 - SM_b20478 0.70 -0.5
492,808 + SM_b20478 0.78 +1.2
492,809 - SM_b20478 0.78 -1.9
493,082 + -0.4
493,106 - +1.1
493,295 - SM_b20479 0.11 +1.0
493,295 - SM_b20479 0.11 -0.0
493,497 + SM_b20479 0.36 +0.9
493,497 + SM_b20479 0.36 -0.1
493,497 + SM_b20479 0.36 -0.7
493,497 + SM_b20479 0.36 -0.5
493,497 + SM_b20479 0.36 -0.1
493,498 - SM_b20479 0.36 +0.0
493,498 - SM_b20479 0.36 +0.2
493,498 - SM_b20479 0.36 +1.8
493,498 - SM_b20479 0.36 -0.1
493,498 - SM_b20479 0.36 +0.7
493,649 + SM_b20479 0.55 -1.0
493,833 + SM_b20479 0.78 -0.3
493,833 + SM_b20479 0.78 -2.7
493,834 - SM_b20479 0.78 -0.3
493,834 - SM_b20479 0.78 -0.2
493,896 + SM_b20479 0.86 -1.1
493,897 - SM_b20479 0.86 -0.2
493,959 + +2.0
493,959 + -0.5
493,960 - +0.3
493,962 - +0.4
494,084 + +0.0
494,085 - +1.4
494,128 - SM_b20480 0.15 +0.3

Or see this region's nucleotide sequence