Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20326

Experiment: LB, pH6

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20325 and SM_b20326 are separated by 87 nucleotidesSM_b20326 and SM_b20327 overlap by 1 nucleotidesSM_b20327 and SM_b20328 are separated by 9 nucleotides SM_b20325: SM_b20325 - ABC transporter for D-trehalose/D-maltose/sucrose, substrate-binding component (ThuE) (from data), at 328,098 to 329,369 _b20325 SM_b20326: SM_b20326 - ABC transporter for D-trehalose/D-maltose/sucrose, permease component 1 (ThuF) (from data), at 329,457 to 330,443 _b20326 SM_b20327: SM_b20327 - ABC transporter for D-trehalose/D-maltose/sucrose, permease component 2 (ThuG) (from data), at 330,443 to 331,273 _b20327 SM_b20328: SM_b20328 - ABC transporter for D-trehalose/D-maltose/sucrose, ATPase component (ThuK) (from data), at 331,283 to 332,311 _b20328 Position (kb) 329 330 331Strain fitness (log2 ratio) -2 -1 0 1 2at 328.500 kb on + strand, within SM_b20325at 328.500 kb on + strand, within SM_b20325at 328.501 kb on - strand, within SM_b20325at 328.501 kb on - strand, within SM_b20325at 328.549 kb on - strand, within SM_b20325at 328.549 kb on - strand, within SM_b20325at 328.549 kb on - strand, within SM_b20325at 328.669 kb on - strand, within SM_b20325at 328.833 kb on + strand, within SM_b20325at 328.889 kb on + strand, within SM_b20325at 328.890 kb on - strand, within SM_b20325at 328.900 kb on - strand, within SM_b20325at 328.905 kb on + strand, within SM_b20325at 328.937 kb on - strand, within SM_b20325at 329.032 kb on - strand, within SM_b20325at 329.073 kb on + strand, within SM_b20325at 329.446 kb on - strandat 329.619 kb on + strand, within SM_b20326at 329.619 kb on + strand, within SM_b20326at 329.619 kb on + strand, within SM_b20326at 329.619 kb on + strand, within SM_b20326at 329.686 kb on - strand, within SM_b20326at 329.777 kb on + strand, within SM_b20326at 329.777 kb on + strand, within SM_b20326at 330.123 kb on + strand, within SM_b20326at 330.123 kb on + strand, within SM_b20326at 330.258 kb on + strand, within SM_b20326at 330.259 kb on - strand, within SM_b20326at 330.399 kb on + strandat 330.400 kb on - strandat 330.400 kb on - strandat 330.400 kb on - strandat 330.400 kb on - strandat 330.477 kb on - strandat 330.522 kb on - strandat 330.522 kb on - strandat 330.525 kb on - strandat 330.575 kb on + strand, within SM_b20327at 330.590 kb on - strand, within SM_b20327at 330.605 kb on + strand, within SM_b20327at 330.605 kb on + strand, within SM_b20327at 330.606 kb on - strand, within SM_b20327at 330.606 kb on - strand, within SM_b20327at 330.685 kb on - strand, within SM_b20327at 330.714 kb on - strand, within SM_b20327at 330.729 kb on + strand, within SM_b20327at 330.729 kb on + strand, within SM_b20327at 330.730 kb on - strand, within SM_b20327at 330.869 kb on + strand, within SM_b20327at 331.272 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB, pH6
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328,500 + SM_b20325 0.32 +0.4
328,500 + SM_b20325 0.32 -0.2
328,501 - SM_b20325 0.32 -1.3
328,501 - SM_b20325 0.32 -0.2
328,549 - SM_b20325 0.35 -0.2
328,549 - SM_b20325 0.35 +0.0
328,549 - SM_b20325 0.35 +0.3
328,669 - SM_b20325 0.45 -0.8
328,833 + SM_b20325 0.58 +0.3
328,889 + SM_b20325 0.62 +0.6
328,890 - SM_b20325 0.62 +1.3
328,900 - SM_b20325 0.63 -0.0
328,905 + SM_b20325 0.63 -0.5
328,937 - SM_b20325 0.66 -0.4
329,032 - SM_b20325 0.73 +2.0
329,073 + SM_b20325 0.77 -0.3
329,446 - +0.6
329,619 + SM_b20326 0.16 -0.2
329,619 + SM_b20326 0.16 -0.1
329,619 + SM_b20326 0.16 -1.2
329,619 + SM_b20326 0.16 +0.1
329,686 - SM_b20326 0.23 -1.5
329,777 + SM_b20326 0.32 -1.2
329,777 + SM_b20326 0.32 -0.6
330,123 + SM_b20326 0.67 -0.2
330,123 + SM_b20326 0.67 +0.0
330,258 + SM_b20326 0.81 -1.9
330,259 - SM_b20326 0.81 -0.3
330,399 + -0.2
330,400 - +0.6
330,400 - -0.3
330,400 - -1.8
330,400 - +0.5
330,477 - +0.2
330,522 - -0.6
330,522 - +0.5
330,525 - -0.2
330,575 + SM_b20327 0.16 -0.4
330,590 - SM_b20327 0.18 -0.0
330,605 + SM_b20327 0.19 -1.6
330,605 + SM_b20327 0.19 +0.5
330,606 - SM_b20327 0.20 +0.2
330,606 - SM_b20327 0.20 -0.7
330,685 - SM_b20327 0.29 +0.0
330,714 - SM_b20327 0.33 +0.2
330,729 + SM_b20327 0.34 -0.7
330,729 + SM_b20327 0.34 -0.0
330,730 - SM_b20327 0.35 +0.2
330,869 + SM_b20327 0.51 -0.3
331,272 - -0.3

Or see this region's nucleotide sequence