Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20283

Experiment: LB, pH6

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20281 and SM_b20282 are separated by 3 nucleotidesSM_b20282 and SM_b20283 are separated by 10 nucleotidesSM_b20283 and SM_b20284 are separated by 84 nucleotides SM_b20281: SM_b20281 - spermidine/putrescine ABC transporter ATP-binding protein, at 285,617 to 286,687 _b20281 SM_b20282: SM_b20282 - spermidine/putrescine ABC transporter permease, at 286,691 to 287,482 _b20282 SM_b20283: SM_b20283 - spermidine/putrescine ABC transporter permease, at 287,493 to 288,476 _b20283 SM_b20284: SM_b20284 - spermidine/putrescine ABC transporter substrate-binding protein, at 288,561 to 289,661 _b20284 Position (kb) 287 288 289Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 286.504 kb on - strand, within SM_b20281at 286.504 kb on - strand, within SM_b20281at 286.504 kb on - strand, within SM_b20281at 286.555 kb on + strand, within SM_b20281at 286.883 kb on + strand, within SM_b20282at 287.231 kb on + strand, within SM_b20282at 287.278 kb on - strand, within SM_b20282at 287.415 kb on + strandat 287.415 kb on + strandat 287.416 kb on - strandat 287.434 kb on - strandat 287.473 kb on - strandat 287.494 kb on + strandat 287.704 kb on + strand, within SM_b20283at 287.704 kb on + strand, within SM_b20283at 287.704 kb on + strand, within SM_b20283at 287.705 kb on - strand, within SM_b20283at 287.706 kb on + strand, within SM_b20283at 287.706 kb on + strand, within SM_b20283at 287.706 kb on + strand, within SM_b20283at 287.706 kb on + strand, within SM_b20283at 287.707 kb on - strand, within SM_b20283at 287.707 kb on - strand, within SM_b20283at 287.707 kb on - strand, within SM_b20283at 287.707 kb on - strand, within SM_b20283at 287.707 kb on - strand, within SM_b20283at 287.839 kb on + strand, within SM_b20283at 287.840 kb on - strand, within SM_b20283at 287.857 kb on + strand, within SM_b20283at 287.857 kb on + strand, within SM_b20283at 287.858 kb on - strand, within SM_b20283at 287.858 kb on - strand, within SM_b20283at 287.872 kb on + strand, within SM_b20283at 287.872 kb on + strand, within SM_b20283at 287.872 kb on + strand, within SM_b20283at 287.873 kb on - strand, within SM_b20283at 287.873 kb on - strand, within SM_b20283at 287.931 kb on - strand, within SM_b20283at 288.085 kb on + strand, within SM_b20283at 288.085 kb on + strand, within SM_b20283at 288.085 kb on + strand, within SM_b20283at 288.085 kb on + strand, within SM_b20283at 288.086 kb on - strand, within SM_b20283at 288.086 kb on - strand, within SM_b20283at 288.241 kb on + strand, within SM_b20283at 288.380 kb on - strandat 288.418 kb on + strandat 288.467 kb on + strandat 288.776 kb on + strand, within SM_b20284at 288.791 kb on + strand, within SM_b20284at 288.791 kb on + strand, within SM_b20284at 288.791 kb on + strand, within SM_b20284at 288.792 kb on - strand, within SM_b20284at 288.793 kb on + strand, within SM_b20284at 288.794 kb on - strand, within SM_b20284at 288.839 kb on - strand, within SM_b20284at 288.839 kb on - strand, within SM_b20284at 288.851 kb on - strand, within SM_b20284at 288.851 kb on - strand, within SM_b20284at 288.851 kb on - strand, within SM_b20284at 288.874 kb on - strand, within SM_b20284at 288.874 kb on - strand, within SM_b20284at 288.926 kb on + strand, within SM_b20284at 288.937 kb on + strand, within SM_b20284at 288.937 kb on + strand, within SM_b20284at 288.938 kb on - strand, within SM_b20284at 288.938 kb on - strand, within SM_b20284at 288.938 kb on - strand, within SM_b20284at 288.938 kb on - strand, within SM_b20284at 288.986 kb on - strand, within SM_b20284at 288.986 kb on - strand, within SM_b20284at 288.988 kb on + strand, within SM_b20284at 288.989 kb on - strand, within SM_b20284at 289.022 kb on - strand, within SM_b20284at 289.022 kb on - strand, within SM_b20284at 289.072 kb on + strand, within SM_b20284at 289.073 kb on - strand, within SM_b20284at 289.138 kb on + strand, within SM_b20284at 289.139 kb on - strand, within SM_b20284at 289.139 kb on - strand, within SM_b20284at 289.139 kb on - strand, within SM_b20284at 289.156 kb on + strand, within SM_b20284at 289.156 kb on + strand, within SM_b20284at 289.156 kb on + strand, within SM_b20284at 289.156 kb on + strand, within SM_b20284at 289.199 kb on + strand, within SM_b20284at 289.199 kb on + strand, within SM_b20284at 289.200 kb on - strand, within SM_b20284at 289.201 kb on + strand, within SM_b20284at 289.252 kb on + strand, within SM_b20284at 289.291 kb on + strand, within SM_b20284at 289.292 kb on - strand, within SM_b20284at 289.439 kb on - strand, within SM_b20284

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Per-strain Table

Position Strand Gene LocusTag Fraction LB, pH6
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286,504 - SM_b20281 0.83 -0.8
286,504 - SM_b20281 0.83 +0.9
286,504 - SM_b20281 0.83 -0.3
286,555 + SM_b20281 0.88 +0.7
286,883 + SM_b20282 0.24 +0.6
287,231 + SM_b20282 0.68 +0.8
287,278 - SM_b20282 0.74 +1.0
287,415 + +0.2
287,415 + -0.5
287,416 - -0.6
287,434 - -0.9
287,473 - +0.4
287,494 + -0.2
287,704 + SM_b20283 0.21 +1.7
287,704 + SM_b20283 0.21 -0.7
287,704 + SM_b20283 0.21 +0.7
287,705 - SM_b20283 0.22 -0.4
287,706 + SM_b20283 0.22 -1.0
287,706 + SM_b20283 0.22 -0.8
287,706 + SM_b20283 0.22 +2.6
287,706 + SM_b20283 0.22 +1.1
287,707 - SM_b20283 0.22 +0.9
287,707 - SM_b20283 0.22 +2.0
287,707 - SM_b20283 0.22 +1.0
287,707 - SM_b20283 0.22 -1.4
287,707 - SM_b20283 0.22 -0.4
287,839 + SM_b20283 0.35 +0.6
287,840 - SM_b20283 0.35 +0.2
287,857 + SM_b20283 0.37 -0.0
287,857 + SM_b20283 0.37 +0.2
287,858 - SM_b20283 0.37 -0.6
287,858 - SM_b20283 0.37 -0.1
287,872 + SM_b20283 0.39 -0.2
287,872 + SM_b20283 0.39 +0.6
287,872 + SM_b20283 0.39 +0.5
287,873 - SM_b20283 0.39 -0.9
287,873 - SM_b20283 0.39 +1.0
287,931 - SM_b20283 0.45 -0.3
288,085 + SM_b20283 0.60 +0.5
288,085 + SM_b20283 0.60 +1.2
288,085 + SM_b20283 0.60 -0.3
288,085 + SM_b20283 0.60 +2.0
288,086 - SM_b20283 0.60 -1.3
288,086 - SM_b20283 0.60 +0.1
288,241 + SM_b20283 0.76 +0.8
288,380 - +0.7
288,418 + +0.9
288,467 + +0.5
288,776 + SM_b20284 0.20 -1.1
288,791 + SM_b20284 0.21 -0.7
288,791 + SM_b20284 0.21 -0.1
288,791 + SM_b20284 0.21 -0.2
288,792 - SM_b20284 0.21 +0.4
288,793 + SM_b20284 0.21 -0.1
288,794 - SM_b20284 0.21 -0.3
288,839 - SM_b20284 0.25 +1.0
288,839 - SM_b20284 0.25 +1.2
288,851 - SM_b20284 0.26 +0.6
288,851 - SM_b20284 0.26 +0.4
288,851 - SM_b20284 0.26 +0.2
288,874 - SM_b20284 0.28 -0.5
288,874 - SM_b20284 0.28 -0.8
288,926 + SM_b20284 0.33 -1.3
288,937 + SM_b20284 0.34 +0.6
288,937 + SM_b20284 0.34 +0.5
288,938 - SM_b20284 0.34 +1.2
288,938 - SM_b20284 0.34 +0.8
288,938 - SM_b20284 0.34 -1.6
288,938 - SM_b20284 0.34 -1.8
288,986 - SM_b20284 0.39 +0.1
288,986 - SM_b20284 0.39 +0.7
288,988 + SM_b20284 0.39 +0.0
288,989 - SM_b20284 0.39 +0.1
289,022 - SM_b20284 0.42 +0.1
289,022 - SM_b20284 0.42 -0.0
289,072 + SM_b20284 0.46 +0.4
289,073 - SM_b20284 0.47 +0.2
289,138 + SM_b20284 0.52 -1.2
289,139 - SM_b20284 0.52 +0.1
289,139 - SM_b20284 0.52 -1.2
289,139 - SM_b20284 0.52 +0.5
289,156 + SM_b20284 0.54 -0.1
289,156 + SM_b20284 0.54 -0.6
289,156 + SM_b20284 0.54 +0.6
289,156 + SM_b20284 0.54 -1.4
289,199 + SM_b20284 0.58 -0.9
289,199 + SM_b20284 0.58 +0.1
289,200 - SM_b20284 0.58 +0.1
289,201 + SM_b20284 0.58 +0.4
289,252 + SM_b20284 0.63 +0.6
289,291 + SM_b20284 0.66 -0.8
289,292 - SM_b20284 0.66 -0.5
289,439 - SM_b20284 0.80 -3.5

Or see this region's nucleotide sequence