Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20279

Experiment: LB, pH6

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20277 and SM_b20278 are separated by 308 nucleotidesSM_b20278 and SM_b20279 are separated by 1 nucleotidesSM_b20279 and SM_b20280 are separated by 31 nucleotides SM_b20277: SM_b20277 - hypothetical protein, at 281,302 to 282,645 _b20277 SM_b20278: SM_b20278 - hypothetical protein, at 282,954 to 283,532 _b20278 SM_b20279: SM_b20279 - hypothetical protein, at 283,534 to 284,037 _b20279 SM_b20280: SM_b20280 - hypothetical protein, at 284,069 to 285,535 _b20280 Position (kb) 283 284 285Strain fitness (log2 ratio) -2 -1 0 1at 282.944 kb on + strandat 282.944 kb on + strandat 283.075 kb on + strand, within SM_b20278at 283.075 kb on + strand, within SM_b20278at 283.076 kb on - strand, within SM_b20278at 283.180 kb on + strand, within SM_b20278at 283.222 kb on + strand, within SM_b20278at 283.322 kb on + strand, within SM_b20278at 283.323 kb on - strand, within SM_b20278at 283.323 kb on - strand, within SM_b20278at 283.323 kb on - strand, within SM_b20278at 283.323 kb on - strand, within SM_b20278at 283.324 kb on + strand, within SM_b20278at 283.324 kb on + strand, within SM_b20278at 283.325 kb on - strand, within SM_b20278at 283.325 kb on - strand, within SM_b20278at 283.325 kb on - strand, within SM_b20278at 283.349 kb on + strand, within SM_b20278at 283.350 kb on - strand, within SM_b20278at 283.409 kb on + strand, within SM_b20278at 283.468 kb on - strand, within SM_b20278at 283.480 kb on + strandat 283.481 kb on - strandat 283.481 kb on - strandat 283.481 kb on - strandat 283.481 kb on - strandat 283.618 kb on - strand, within SM_b20279at 283.808 kb on + strand, within SM_b20279at 283.808 kb on + strand, within SM_b20279at 283.808 kb on + strand, within SM_b20279at 283.808 kb on + strand, within SM_b20279at 283.808 kb on + strand, within SM_b20279at 283.808 kb on + strand, within SM_b20279at 283.809 kb on - strand, within SM_b20279at 284.143 kb on - strandat 284.166 kb on - strandat 284.280 kb on + strand, within SM_b20280at 284.281 kb on - strand, within SM_b20280at 284.406 kb on + strand, within SM_b20280at 284.662 kb on - strand, within SM_b20280

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Per-strain Table

Position Strand Gene LocusTag Fraction LB, pH6
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282,944 + -1.1
282,944 + -0.5
283,075 + SM_b20278 0.21 -0.1
283,075 + SM_b20278 0.21 -0.1
283,076 - SM_b20278 0.21 +0.2
283,180 + SM_b20278 0.39 +0.2
283,222 + SM_b20278 0.46 -0.0
283,322 + SM_b20278 0.64 +0.2
283,323 - SM_b20278 0.64 -0.3
283,323 - SM_b20278 0.64 +1.1
283,323 - SM_b20278 0.64 -0.0
283,323 - SM_b20278 0.64 -0.2
283,324 + SM_b20278 0.64 -0.7
283,324 + SM_b20278 0.64 +1.6
283,325 - SM_b20278 0.64 -0.8
283,325 - SM_b20278 0.64 +1.0
283,325 - SM_b20278 0.64 +0.8
283,349 + SM_b20278 0.68 -1.5
283,350 - SM_b20278 0.68 +0.4
283,409 + SM_b20278 0.79 -0.2
283,468 - SM_b20278 0.89 -1.0
283,480 + +0.7
283,481 - +1.3
283,481 - +1.4
283,481 - +0.0
283,481 - +0.5
283,618 - SM_b20279 0.17 -1.6
283,808 + SM_b20279 0.54 +1.7
283,808 + SM_b20279 0.54 -2.5
283,808 + SM_b20279 0.54 -0.2
283,808 + SM_b20279 0.54 +0.5
283,808 + SM_b20279 0.54 +1.3
283,808 + SM_b20279 0.54 +0.7
283,809 - SM_b20279 0.55 +0.3
284,143 - -2.0
284,166 - +0.3
284,280 + SM_b20280 0.14 +1.3
284,281 - SM_b20280 0.14 -0.2
284,406 + SM_b20280 0.23 +1.0
284,662 - SM_b20280 0.40 +0.0

Or see this region's nucleotide sequence