Experiment: LB, pH6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20109 and SM_b20110 overlap by 4 nucleotides SM_b20110 and SM_b20111 overlap by 4 nucleotides SM_b20111 and SM_b20112 overlap by 4 nucleotides SM_b20112 and SM_b20113 are separated by 36 nucleotides
SM_b20109: SM_b20109 - peptide ABC transporter permease, at 120,284 to 121,207
_b20109
SM_b20110: SM_b20110 - oligopeptide ABC transporter permease, at 121,204 to 122,151
_b20110
SM_b20111: SM_b20111 - oligopeptide ABC transporter ATP-binding protein, at 122,148 to 123,788
_b20111
SM_b20112: SM_b20112 - hypothetical protein, at 123,785 to 124,672
_b20112
SM_b20113: SM_b20113 - dehydrogenase, at 124,709 to 125,641
_b20113
Position (kb) 122
123
124 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 121.156 kb on - strand at 121.166 kb on + strand at 121.188 kb on + strand at 121.188 kb on + strand at 121.189 kb on - strand at 121.189 kb on - strand at 121.189 kb on - strand at 121.189 kb on - strand at 121.435 kb on + strand, within SM_b20110 at 121.435 kb on + strand, within SM_b20110 at 121.436 kb on - strand, within SM_b20110 at 121.573 kb on + strand, within SM_b20110 at 121.726 kb on + strand, within SM_b20110 at 121.726 kb on + strand, within SM_b20110 at 121.726 kb on + strand, within SM_b20110 at 121.931 kb on + strand, within SM_b20110 at 121.932 kb on - strand, within SM_b20110 at 121.932 kb on - strand, within SM_b20110 at 122.053 kb on - strand, within SM_b20110 at 122.077 kb on + strand at 122.077 kb on + strand at 122.078 kb on - strand at 122.078 kb on - strand at 122.078 kb on - strand at 122.078 kb on - strand at 122.476 kb on - strand, within SM_b20111 at 122.476 kb on - strand, within SM_b20111 at 122.477 kb on + strand, within SM_b20111 at 122.904 kb on + strand, within SM_b20111 at 122.905 kb on - strand, within SM_b20111 at 122.906 kb on + strand, within SM_b20111 at 122.945 kb on + strand, within SM_b20111 at 122.945 kb on + strand, within SM_b20111 at 122.946 kb on - strand, within SM_b20111 at 122.946 kb on - strand, within SM_b20111 at 123.015 kb on + strand, within SM_b20111 at 123.015 kb on + strand, within SM_b20111 at 123.016 kb on - strand, within SM_b20111 at 123.016 kb on - strand, within SM_b20111 at 123.018 kb on - strand, within SM_b20111 at 123.277 kb on - strand, within SM_b20111 at 123.278 kb on + strand, within SM_b20111 at 123.278 kb on + strand, within SM_b20111 at 123.278 kb on + strand, within SM_b20111 at 123.279 kb on - strand, within SM_b20111 at 123.279 kb on - strand, within SM_b20111 at 123.279 kb on - strand, within SM_b20111 at 123.597 kb on + strand, within SM_b20111 at 123.607 kb on + strand, within SM_b20111 at 123.723 kb on + strand at 123.725 kb on + strand at 123.725 kb on + strand at 123.726 kb on - strand at 123.726 kb on - strand at 123.726 kb on - strand at 123.947 kb on + strand, within SM_b20112 at 123.947 kb on + strand, within SM_b20112 at 123.948 kb on - strand, within SM_b20112 at 124.086 kb on + strand, within SM_b20112 at 124.477 kb on - strand, within SM_b20112 at 124.477 kb on - strand, within SM_b20112 at 124.477 kb on - strand, within SM_b20112 at 124.671 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB, pH6 remove 121,156 - -0.6 121,166 + +1.3 121,188 + -0.2 121,188 + -0.0 121,189 - +2.0 121,189 - +2.0 121,189 - +1.0 121,189 - +0.4 121,435 + SM_b20110 0.24 -0.3 121,435 + SM_b20110 0.24 -1.2 121,436 - SM_b20110 0.24 +1.0 121,573 + SM_b20110 0.39 -1.3 121,726 + SM_b20110 0.55 +0.3 121,726 + SM_b20110 0.55 -0.5 121,726 + SM_b20110 0.55 +0.2 121,931 + SM_b20110 0.77 +0.7 121,932 - SM_b20110 0.77 +3.0 121,932 - SM_b20110 0.77 -0.0 122,053 - SM_b20110 0.90 +0.0 122,077 + +0.5 122,077 + +2.5 122,078 - -0.5 122,078 - +0.8 122,078 - -0.6 122,078 - +1.1 122,476 - SM_b20111 0.20 -0.8 122,476 - SM_b20111 0.20 -0.3 122,477 + SM_b20111 0.20 -0.9 122,904 + SM_b20111 0.46 -0.8 122,905 - SM_b20111 0.46 -2.5 122,906 + SM_b20111 0.46 -0.6 122,945 + SM_b20111 0.49 +0.4 122,945 + SM_b20111 0.49 -0.6 122,946 - SM_b20111 0.49 +0.4 122,946 - SM_b20111 0.49 -1.0 123,015 + SM_b20111 0.53 -0.4 123,015 + SM_b20111 0.53 -0.2 123,016 - SM_b20111 0.53 -0.4 123,016 - SM_b20111 0.53 -0.9 123,018 - SM_b20111 0.53 +0.7 123,277 - SM_b20111 0.69 +0.3 123,278 + SM_b20111 0.69 -0.9 123,278 + SM_b20111 0.69 -1.3 123,278 + SM_b20111 0.69 +0.2 123,279 - SM_b20111 0.69 -0.3 123,279 - SM_b20111 0.69 -0.7 123,279 - SM_b20111 0.69 -1.9 123,597 + SM_b20111 0.88 -1.3 123,607 + SM_b20111 0.89 +0.6 123,723 + +0.4 123,725 + -0.8 123,725 + +2.0 123,726 - +0.7 123,726 - -1.1 123,726 - +0.6 123,947 + SM_b20112 0.18 -1.0 123,947 + SM_b20112 0.18 +0.6 123,948 - SM_b20112 0.18 -0.5 124,086 + SM_b20112 0.34 +0.2 124,477 - SM_b20112 0.78 -1.2 124,477 - SM_b20112 0.78 -0.5 124,477 - SM_b20112 0.78 +0.4 124,671 - +1.0
Or see this region's nucleotide sequence