Experiment: Collected from freezer stock
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMJJ_RS02135 and MMJJ_RS02140 overlap by 4 nucleotides MMJJ_RS02140 and MMJJ_RS02145 are separated by 43 nucleotides MMJJ_RS02145 and MMJJ_RS02150 are separated by 123 nucleotides
MMJJ_RS02135: MMJJ_RS02135 - TatD family hydrolase, at 406,175 to 407,017
_RS02135
MMJJ_RS02140: MMJJ_RS02140 - preflagellin peptidase FlaK, at 407,014 to 407,706
_RS02140
MMJJ_RS02145: MMJJ_RS02145 - class I SAM-dependent methyltransferase, at 407,750 to 408,352
_RS02145
MMJJ_RS02150: MMJJ_RS02150 - ornithine carbamoyltransferase, at 408,476 to 409,390
_RS02150
Position (kb) 407
408
409 Strain fitness (log2 ratio) -1
0
1
2 at 406.758 kb on - strand, within MMJJ_RS02135 at 406.856 kb on - strand, within MMJJ_RS02135 at 407.039 kb on + strand at 407.039 kb on + strand at 407.065 kb on - strand at 407.066 kb on + strand at 407.066 kb on + strand at 407.069 kb on - strand at 407.069 kb on - strand at 407.069 kb on - strand at 407.069 kb on - strand at 407.070 kb on + strand at 407.070 kb on + strand at 407.070 kb on + strand at 407.070 kb on + strand at 407.074 kb on - strand at 407.075 kb on + strand at 407.080 kb on - strand at 407.091 kb on - strand, within MMJJ_RS02140 at 407.110 kb on + strand, within MMJJ_RS02140 at 407.117 kb on + strand, within MMJJ_RS02140 at 407.135 kb on - strand, within MMJJ_RS02140 at 407.136 kb on + strand, within MMJJ_RS02140 at 407.381 kb on - strand, within MMJJ_RS02140 at 407.382 kb on + strand, within MMJJ_RS02140 at 407.414 kb on - strand, within MMJJ_RS02140 at 407.414 kb on - strand, within MMJJ_RS02140 at 407.414 kb on - strand, within MMJJ_RS02140 at 407.414 kb on - strand, within MMJJ_RS02140 at 407.415 kb on + strand, within MMJJ_RS02140 at 407.415 kb on + strand, within MMJJ_RS02140 at 407.415 kb on + strand, within MMJJ_RS02140 at 407.415 kb on + strand, within MMJJ_RS02140 at 407.415 kb on + strand, within MMJJ_RS02140 at 407.415 kb on + strand, within MMJJ_RS02140 at 407.492 kb on + strand, within MMJJ_RS02140 at 407.502 kb on - strand, within MMJJ_RS02140 at 407.504 kb on - strand, within MMJJ_RS02140 at 407.627 kb on - strand, within MMJJ_RS02140 at 407.628 kb on + strand, within MMJJ_RS02140 at 407.628 kb on + strand, within MMJJ_RS02140 at 407.668 kb on - strand at 407.684 kb on + strand at 407.697 kb on + strand at 407.697 kb on + strand at 407.725 kb on - strand at 407.730 kb on + strand at 407.730 kb on + strand at 407.730 kb on + strand at 407.741 kb on + strand at 407.799 kb on + strand at 407.804 kb on + strand at 407.837 kb on + strand, within MMJJ_RS02145 at 407.838 kb on - strand, within MMJJ_RS02145 at 407.843 kb on + strand, within MMJJ_RS02145 at 407.903 kb on - strand, within MMJJ_RS02145 at 407.940 kb on + strand, within MMJJ_RS02145 at 407.958 kb on + strand, within MMJJ_RS02145 at 407.974 kb on - strand, within MMJJ_RS02145 at 407.979 kb on + strand, within MMJJ_RS02145 at 407.979 kb on + strand, within MMJJ_RS02145 at 408.000 kb on + strand, within MMJJ_RS02145 at 408.012 kb on + strand, within MMJJ_RS02145 at 408.012 kb on + strand, within MMJJ_RS02145 at 408.057 kb on + strand, within MMJJ_RS02145 at 408.057 kb on + strand, within MMJJ_RS02145 at 408.099 kb on + strand, within MMJJ_RS02145 at 408.122 kb on + strand, within MMJJ_RS02145 at 408.142 kb on - strand, within MMJJ_RS02145 at 408.142 kb on - strand, within MMJJ_RS02145 at 408.143 kb on + strand, within MMJJ_RS02145 at 408.146 kb on - strand, within MMJJ_RS02145 at 408.147 kb on + strand, within MMJJ_RS02145 at 408.147 kb on + strand, within MMJJ_RS02145 at 408.147 kb on + strand, within MMJJ_RS02145 at 408.173 kb on - strand, within MMJJ_RS02145 at 408.173 kb on - strand, within MMJJ_RS02145 at 408.209 kb on - strand, within MMJJ_RS02145 at 408.215 kb on - strand, within MMJJ_RS02145 at 408.215 kb on - strand, within MMJJ_RS02145 at 408.216 kb on + strand, within MMJJ_RS02145 at 408.219 kb on + strand, within MMJJ_RS02145 at 408.219 kb on + strand, within MMJJ_RS02145 at 408.259 kb on - strand, within MMJJ_RS02145 at 408.304 kb on - strand at 408.304 kb on - strand at 408.307 kb on - strand at 408.381 kb on - strand at 408.382 kb on + strand at 408.385 kb on - strand at 408.390 kb on + strand at 408.390 kb on + strand at 408.395 kb on - strand at 408.395 kb on - strand at 408.395 kb on - strand at 408.396 kb on + strand at 408.404 kb on - strand at 408.405 kb on + strand at 408.407 kb on + strand at 408.407 kb on + strand at 408.413 kb on - strand at 408.413 kb on - strand at 408.413 kb on - strand at 408.413 kb on - strand at 408.413 kb on - strand at 408.414 kb on + strand at 408.414 kb on + strand at 408.414 kb on + strand at 408.414 kb on + strand at 408.414 kb on + strand at 408.414 kb on + strand at 408.414 kb on + strand at 408.414 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Collected from freezer stock remove 406,758 - MMJJ_RS02135 0.69 -0.3 406,856 - MMJJ_RS02135 0.81 -0.4 407,039 + +0.2 407,039 + +0.5 407,065 - -0.3 407,066 + +0.7 407,066 + +0.2 407,069 - +0.6 407,069 - +1.6 407,069 - -0.3 407,069 - -0.4 407,070 + +0.1 407,070 + -0.0 407,070 + +0.9 407,070 + -0.5 407,074 - -0.7 407,075 + +0.5 407,080 - +0.2 407,091 - MMJJ_RS02140 0.11 +0.5 407,110 + MMJJ_RS02140 0.14 -0.4 407,117 + MMJJ_RS02140 0.15 +1.4 407,135 - MMJJ_RS02140 0.17 +0.2 407,136 + MMJJ_RS02140 0.18 -1.0 407,381 - MMJJ_RS02140 0.53 -0.0 407,382 + MMJJ_RS02140 0.53 +0.0 407,414 - MMJJ_RS02140 0.58 +0.6 407,414 - MMJJ_RS02140 0.58 -0.7 407,414 - MMJJ_RS02140 0.58 -0.6 407,414 - MMJJ_RS02140 0.58 +0.5 407,415 + MMJJ_RS02140 0.58 +0.2 407,415 + MMJJ_RS02140 0.58 -0.1 407,415 + MMJJ_RS02140 0.58 -0.3 407,415 + MMJJ_RS02140 0.58 -0.3 407,415 + MMJJ_RS02140 0.58 -0.3 407,415 + MMJJ_RS02140 0.58 +2.6 407,492 + MMJJ_RS02140 0.69 +0.8 407,502 - MMJJ_RS02140 0.70 -0.8 407,504 - MMJJ_RS02140 0.71 -0.4 407,627 - MMJJ_RS02140 0.88 +0.1 407,628 + MMJJ_RS02140 0.89 +0.2 407,628 + MMJJ_RS02140 0.89 -0.0 407,668 - -0.5 407,684 + +0.3 407,697 + -0.4 407,697 + -0.3 407,725 - -0.2 407,730 + +0.6 407,730 + +0.4 407,730 + +0.1 407,741 + +1.5 407,799 + -0.4 407,804 + -0.1 407,837 + MMJJ_RS02145 0.14 +0.5 407,838 - MMJJ_RS02145 0.15 +0.4 407,843 + MMJJ_RS02145 0.15 -0.1 407,903 - MMJJ_RS02145 0.25 +0.1 407,940 + MMJJ_RS02145 0.32 -0.4 407,958 + MMJJ_RS02145 0.34 -0.0 407,974 - MMJJ_RS02145 0.37 +0.1 407,979 + MMJJ_RS02145 0.38 -0.9 407,979 + MMJJ_RS02145 0.38 +1.0 408,000 + MMJJ_RS02145 0.41 -0.1 408,012 + MMJJ_RS02145 0.43 -0.7 408,012 + MMJJ_RS02145 0.43 +0.3 408,057 + MMJJ_RS02145 0.51 -0.6 408,057 + MMJJ_RS02145 0.51 +0.1 408,099 + MMJJ_RS02145 0.58 -0.1 408,122 + MMJJ_RS02145 0.62 -0.4 408,142 - MMJJ_RS02145 0.65 -0.5 408,142 - MMJJ_RS02145 0.65 -0.2 408,143 + MMJJ_RS02145 0.65 -0.2 408,146 - MMJJ_RS02145 0.66 -0.3 408,147 + MMJJ_RS02145 0.66 -0.5 408,147 + MMJJ_RS02145 0.66 -0.1 408,147 + MMJJ_RS02145 0.66 -0.0 408,173 - MMJJ_RS02145 0.70 +0.7 408,173 - MMJJ_RS02145 0.70 -0.2 408,209 - MMJJ_RS02145 0.76 +0.2 408,215 - MMJJ_RS02145 0.77 -0.3 408,215 - MMJJ_RS02145 0.77 +0.8 408,216 + MMJJ_RS02145 0.77 +0.2 408,219 + MMJJ_RS02145 0.78 -0.5 408,219 + MMJJ_RS02145 0.78 -1.1 408,259 - MMJJ_RS02145 0.84 -0.0 408,304 - -0.3 408,304 - -0.4 408,307 - -0.2 408,381 - +1.1 408,382 + -0.5 408,385 - -0.8 408,390 + -0.9 408,390 + -0.3 408,395 - -0.1 408,395 - -0.2 408,395 - -0.3 408,396 + +1.1 408,404 - +0.1 408,405 + +1.0 408,407 + -0.5 408,407 + +0.4 408,413 - -0.5 408,413 - +0.6 408,413 - +0.2 408,413 - +1.0 408,413 - +0.8 408,414 + +0.4 408,414 + +0.2 408,414 + -0.2 408,414 + +0.3 408,414 + +0.0 408,414 + -0.7 408,414 + -0.2 408,414 + +0.4
Or see this region's nucleotide sequence