Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS01380

Experiment: Collected from freezer stock

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMMJJ_RS01370 and MMJJ_RS01375 are separated by 13 nucleotidesMMJJ_RS01375 and MMJJ_RS01380 are separated by 39 nucleotidesMMJJ_RS01380 and MMJJ_RS01385 are separated by 194 nucleotidesMMJJ_RS01385 and MMJJ_RS01390 are separated by 23 nucleotides MMJJ_RS01370: MMJJ_RS01370 - MnmC family methyltransferase, at 264,942 to 265,964 _RS01370 MMJJ_RS01375: MMJJ_RS01375 - tetrahydromethanopterin:alpha-L-glutamate ligase, at 265,978 to 266,856 _RS01375 MMJJ_RS01380: MMJJ_RS01380 - DUF1890 domain-containing protein, at 266,896 to 267,339 _RS01380 MMJJ_RS01385: MMJJ_RS01385 - PadR family transcriptional regulator, at 267,534 to 268,085 _RS01385 MMJJ_RS01390: MMJJ_RS01390 - MATE family efflux transporter, at 268,109 to 269,452 _RS01390 Position (kb) 266 267 268Strain fitness (log2 ratio) -2 -1 0 1 2 3at 265.913 kb on + strandat 265.951 kb on + strandat 265.979 kb on - strandat 266.032 kb on - strandat 266.033 kb on + strandat 266.078 kb on + strand, within MMJJ_RS01375at 266.114 kb on + strand, within MMJJ_RS01375at 266.114 kb on + strand, within MMJJ_RS01375at 266.119 kb on - strand, within MMJJ_RS01375at 266.119 kb on - strand, within MMJJ_RS01375at 266.119 kb on - strand, within MMJJ_RS01375at 266.120 kb on + strand, within MMJJ_RS01375at 266.174 kb on + strand, within MMJJ_RS01375at 266.247 kb on - strand, within MMJJ_RS01375at 266.250 kb on + strand, within MMJJ_RS01375at 266.336 kb on - strand, within MMJJ_RS01375at 266.337 kb on + strand, within MMJJ_RS01375at 266.337 kb on + strand, within MMJJ_RS01375at 266.358 kb on - strand, within MMJJ_RS01375at 266.398 kb on + strand, within MMJJ_RS01375at 266.410 kb on - strand, within MMJJ_RS01375at 266.411 kb on + strand, within MMJJ_RS01375at 266.411 kb on + strand, within MMJJ_RS01375at 266.447 kb on + strand, within MMJJ_RS01375at 266.466 kb on - strand, within MMJJ_RS01375at 266.562 kb on - strand, within MMJJ_RS01375at 266.599 kb on - strand, within MMJJ_RS01375at 266.599 kb on - strand, within MMJJ_RS01375at 266.600 kb on + strand, within MMJJ_RS01375at 266.605 kb on - strand, within MMJJ_RS01375at 266.605 kb on - strand, within MMJJ_RS01375at 266.605 kb on - strand, within MMJJ_RS01375at 266.605 kb on - strand, within MMJJ_RS01375at 266.609 kb on - strand, within MMJJ_RS01375at 266.621 kb on - strand, within MMJJ_RS01375at 266.621 kb on - strand, within MMJJ_RS01375at 266.621 kb on - strand, within MMJJ_RS01375at 266.626 kb on - strand, within MMJJ_RS01375at 266.627 kb on + strand, within MMJJ_RS01375at 266.627 kb on + strand, within MMJJ_RS01375at 266.674 kb on + strand, within MMJJ_RS01375at 266.706 kb on - strand, within MMJJ_RS01375at 266.725 kb on + strand, within MMJJ_RS01375at 266.764 kb on - strand, within MMJJ_RS01375at 266.764 kb on - strand, within MMJJ_RS01375at 266.767 kb on + strand, within MMJJ_RS01375at 266.779 kb on - strandat 266.779 kb on - strandat 266.779 kb on - strandat 266.780 kb on + strandat 266.857 kb on + strandat 266.857 kb on + strandat 266.859 kb on - strandat 266.868 kb on + strandat 266.888 kb on - strandat 266.889 kb on + strandat 266.889 kb on + strandat 267.043 kb on + strand, within MMJJ_RS01380at 267.046 kb on - strand, within MMJJ_RS01380at 267.046 kb on - strand, within MMJJ_RS01380at 267.047 kb on + strand, within MMJJ_RS01380at 267.070 kb on - strand, within MMJJ_RS01380at 267.077 kb on - strand, within MMJJ_RS01380at 267.077 kb on - strand, within MMJJ_RS01380at 267.077 kb on - strand, within MMJJ_RS01380at 267.078 kb on + strand, within MMJJ_RS01380at 267.078 kb on + strand, within MMJJ_RS01380at 267.078 kb on + strand, within MMJJ_RS01380at 267.078 kb on + strand, within MMJJ_RS01380at 267.078 kb on + strand, within MMJJ_RS01380at 267.082 kb on + strand, within MMJJ_RS01380at 267.082 kb on + strand, within MMJJ_RS01380at 267.180 kb on + strand, within MMJJ_RS01380at 267.180 kb on + strand, within MMJJ_RS01380at 267.182 kb on - strand, within MMJJ_RS01380at 267.183 kb on + strand, within MMJJ_RS01380at 267.242 kb on + strand, within MMJJ_RS01380at 267.267 kb on - strand, within MMJJ_RS01380at 267.267 kb on - strand, within MMJJ_RS01380at 267.354 kb on - strandat 267.354 kb on - strandat 267.355 kb on + strandat 267.355 kb on + strandat 267.359 kb on - strandat 267.365 kb on - strandat 267.365 kb on - strandat 267.366 kb on + strandat 267.366 kb on + strandat 267.367 kb on - strandat 267.368 kb on + strandat 267.389 kb on + strandat 267.416 kb on - strandat 267.423 kb on - strandat 267.445 kb on - strandat 267.446 kb on + strandat 267.446 kb on + strandat 267.450 kb on + strandat 267.457 kb on - strandat 267.464 kb on + strandat 267.476 kb on + strandat 267.477 kb on - strandat 267.477 kb on - strandat 267.477 kb on - strandat 267.477 kb on - strandat 267.478 kb on + strandat 267.478 kb on + strandat 267.478 kb on + strandat 267.479 kb on - strandat 267.479 kb on - strandat 267.479 kb on - strandat 267.480 kb on + strandat 267.481 kb on - strandat 267.502 kb on + strandat 267.502 kb on + strandat 267.519 kb on - strandat 267.519 kb on - strandat 267.519 kb on - strandat 267.519 kb on - strandat 267.562 kb on - strandat 267.562 kb on - strandat 267.603 kb on - strand, within MMJJ_RS01385at 267.603 kb on - strand, within MMJJ_RS01385at 267.603 kb on - strand, within MMJJ_RS01385at 267.604 kb on + strand, within MMJJ_RS01385at 267.604 kb on + strand, within MMJJ_RS01385at 267.604 kb on + strand, within MMJJ_RS01385at 267.604 kb on + strand, within MMJJ_RS01385at 267.604 kb on + strand, within MMJJ_RS01385at 267.604 kb on + strand, within MMJJ_RS01385at 267.604 kb on + strand, within MMJJ_RS01385at 267.676 kb on - strand, within MMJJ_RS01385at 267.678 kb on - strand, within MMJJ_RS01385at 267.678 kb on - strand, within MMJJ_RS01385at 267.678 kb on - strand, within MMJJ_RS01385at 267.678 kb on - strand, within MMJJ_RS01385at 267.678 kb on - strand, within MMJJ_RS01385at 267.678 kb on - strand, within MMJJ_RS01385at 267.678 kb on - strand, within MMJJ_RS01385at 267.678 kb on - strand, within MMJJ_RS01385at 267.678 kb on - strand, within MMJJ_RS01385at 267.679 kb on + strand, within MMJJ_RS01385at 267.679 kb on + strand, within MMJJ_RS01385at 267.679 kb on + strandat 267.679 kb on + strand, within MMJJ_RS01385at 267.679 kb on + strand, within MMJJ_RS01385at 267.679 kb on + strand, within MMJJ_RS01385at 267.681 kb on - strand, within MMJJ_RS01385at 267.681 kb on - strand, within MMJJ_RS01385at 267.681 kb on - strand, within MMJJ_RS01385at 267.681 kb on - strand, within MMJJ_RS01385at 267.681 kb on - strand, within MMJJ_RS01385at 267.681 kb on - strand, within MMJJ_RS01385at 267.681 kb on - strand, within MMJJ_RS01385at 267.681 kb on - strand, within MMJJ_RS01385at 267.682 kb on + strand, within MMJJ_RS01385at 267.682 kb on + strand, within MMJJ_RS01385at 267.682 kb on + strand, within MMJJ_RS01385at 267.682 kb on + strand, within MMJJ_RS01385at 267.689 kb on + strand, within MMJJ_RS01385at 267.760 kb on + strand, within MMJJ_RS01385at 267.944 kb on + strand, within MMJJ_RS01385at 267.944 kb on + strand, within MMJJ_RS01385at 267.946 kb on + strand, within MMJJ_RS01385at 268.131 kb on - strandat 268.159 kb on + strandat 268.159 kb on + strandat 268.214 kb on + strandat 268.214 kb on + strandat 268.215 kb on - strandat 268.261 kb on - strand, within MMJJ_RS01390at 268.262 kb on + strand, within MMJJ_RS01390at 268.314 kb on - strand, within MMJJ_RS01390

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Collected from freezer stock
remove
265,913 + +0.3
265,951 + -0.4
265,979 - -0.1
266,032 - +0.0
266,033 + +0.0
266,078 + MMJJ_RS01375 0.11 -0.1
266,114 + MMJJ_RS01375 0.15 +1.2
266,114 + MMJJ_RS01375 0.15 +0.6
266,119 - MMJJ_RS01375 0.16 +0.2
266,119 - MMJJ_RS01375 0.16 +0.0
266,119 - MMJJ_RS01375 0.16 +0.6
266,120 + MMJJ_RS01375 0.16 +0.1
266,174 + MMJJ_RS01375 0.22 +0.7
266,247 - MMJJ_RS01375 0.31 -0.5
266,250 + MMJJ_RS01375 0.31 +1.0
266,336 - MMJJ_RS01375 0.41 -0.2
266,337 + MMJJ_RS01375 0.41 +0.3
266,337 + MMJJ_RS01375 0.41 +0.0
266,358 - MMJJ_RS01375 0.43 +0.3
266,398 + MMJJ_RS01375 0.48 -1.0
266,410 - MMJJ_RS01375 0.49 +1.0
266,411 + MMJJ_RS01375 0.49 +0.3
266,411 + MMJJ_RS01375 0.49 -1.2
266,447 + MMJJ_RS01375 0.53 +0.5
266,466 - MMJJ_RS01375 0.56 +0.2
266,562 - MMJJ_RS01375 0.66 +0.2
266,599 - MMJJ_RS01375 0.71 +0.2
266,599 - MMJJ_RS01375 0.71 +0.7
266,600 + MMJJ_RS01375 0.71 -0.2
266,605 - MMJJ_RS01375 0.71 +0.1
266,605 - MMJJ_RS01375 0.71 -0.4
266,605 - MMJJ_RS01375 0.71 +0.1
266,605 - MMJJ_RS01375 0.71 -0.0
266,609 - MMJJ_RS01375 0.72 -0.6
266,621 - MMJJ_RS01375 0.73 +0.8
266,621 - MMJJ_RS01375 0.73 +0.6
266,621 - MMJJ_RS01375 0.73 +0.2
266,626 - MMJJ_RS01375 0.74 +0.1
266,627 + MMJJ_RS01375 0.74 +0.2
266,627 + MMJJ_RS01375 0.74 -0.2
266,674 + MMJJ_RS01375 0.79 -0.3
266,706 - MMJJ_RS01375 0.83 -0.1
266,725 + MMJJ_RS01375 0.85 +0.2
266,764 - MMJJ_RS01375 0.89 +1.5
266,764 - MMJJ_RS01375 0.89 +0.2
266,767 + MMJJ_RS01375 0.90 -0.3
266,779 - +0.8
266,779 - +2.0
266,779 - +0.5
266,780 + -0.3
266,857 + -0.4
266,857 + +0.0
266,859 - +1.5
266,868 + -0.4
266,888 - +0.1
266,889 + +0.3
266,889 + -0.1
267,043 + MMJJ_RS01380 0.33 -0.3
267,046 - MMJJ_RS01380 0.34 -0.8
267,046 - MMJJ_RS01380 0.34 +1.4
267,047 + MMJJ_RS01380 0.34 -0.5
267,070 - MMJJ_RS01380 0.39 +0.0
267,077 - MMJJ_RS01380 0.41 -0.2
267,077 - MMJJ_RS01380 0.41 -0.8
267,077 - MMJJ_RS01380 0.41 +0.2
267,078 + MMJJ_RS01380 0.41 -0.2
267,078 + MMJJ_RS01380 0.41 -0.3
267,078 + MMJJ_RS01380 0.41 -0.5
267,078 + MMJJ_RS01380 0.41 -0.4
267,078 + MMJJ_RS01380 0.41 -0.1
267,082 + MMJJ_RS01380 0.42 +0.2
267,082 + MMJJ_RS01380 0.42 +0.3
267,180 + MMJJ_RS01380 0.64 -0.3
267,180 + MMJJ_RS01380 0.64 +0.8
267,182 - MMJJ_RS01380 0.64 +0.4
267,183 + MMJJ_RS01380 0.65 -0.3
267,242 + MMJJ_RS01380 0.78 +0.3
267,267 - MMJJ_RS01380 0.84 -0.8
267,267 - MMJJ_RS01380 0.84 +1.9
267,354 - -0.3
267,354 - -0.3
267,355 + +0.8
267,355 + +0.1
267,359 - +1.9
267,365 - -1.2
267,365 - -0.5
267,366 + +0.2
267,366 + -0.3
267,367 - -0.2
267,368 + +0.2
267,389 + +0.2
267,416 - +0.4
267,423 - +0.2
267,445 - -0.5
267,446 + +1.2
267,446 + +0.1
267,450 + +0.1
267,457 - -0.7
267,464 + -0.1
267,476 + +0.0
267,477 - +0.3
267,477 - +0.1
267,477 - +0.3
267,477 - -0.4
267,478 + +0.1
267,478 + +0.6
267,478 + +0.3
267,479 - +0.2
267,479 - -0.5
267,479 - -0.4
267,480 + +0.3
267,481 - -0.6
267,502 + -0.4
267,502 + +0.4
267,519 - -0.3
267,519 - +1.0
267,519 - +0.0
267,519 - -0.1
267,562 - +0.1
267,562 - -0.2
267,603 - MMJJ_RS01385 0.12 +0.1
267,603 - MMJJ_RS01385 0.12 -0.6
267,603 - MMJJ_RS01385 0.12 -0.1
267,604 + MMJJ_RS01385 0.13 -0.5
267,604 + MMJJ_RS01385 0.13 -0.8
267,604 + MMJJ_RS01385 0.13 +0.5
267,604 + MMJJ_RS01385 0.13 -0.0
267,604 + MMJJ_RS01385 0.13 -0.1
267,604 + MMJJ_RS01385 0.13 +0.4
267,604 + MMJJ_RS01385 0.13 +0.3
267,676 - MMJJ_RS01385 0.26 -0.2
267,678 - MMJJ_RS01385 0.26 +0.5
267,678 - MMJJ_RS01385 0.26 -0.7
267,678 - MMJJ_RS01385 0.26 -0.8
267,678 - MMJJ_RS01385 0.26 -1.9
267,678 - MMJJ_RS01385 0.26 +0.0
267,678 - MMJJ_RS01385 0.26 -0.1
267,678 - MMJJ_RS01385 0.26 +0.7
267,678 - MMJJ_RS01385 0.26 -0.4
267,678 - MMJJ_RS01385 0.26 +0.5
267,679 + MMJJ_RS01385 0.26 -0.4
267,679 + MMJJ_RS01385 0.26 -0.1
267,679 + +1.6
267,679 + MMJJ_RS01385 0.26 -0.4
267,679 + MMJJ_RS01385 0.26 -0.1
267,679 + MMJJ_RS01385 0.26 -0.2
267,681 - MMJJ_RS01385 0.27 -0.3
267,681 - MMJJ_RS01385 0.27 +0.4
267,681 - MMJJ_RS01385 0.27 +0.3
267,681 - MMJJ_RS01385 0.27 +0.0
267,681 - MMJJ_RS01385 0.27 -0.0
267,681 - MMJJ_RS01385 0.27 +1.8
267,681 - MMJJ_RS01385 0.27 +0.3
267,681 - MMJJ_RS01385 0.27 -0.2
267,682 + MMJJ_RS01385 0.27 -0.1
267,682 + MMJJ_RS01385 0.27 +0.8
267,682 + MMJJ_RS01385 0.27 -0.8
267,682 + MMJJ_RS01385 0.27 +0.0
267,689 + MMJJ_RS01385 0.28 +1.5
267,760 + MMJJ_RS01385 0.41 +0.5
267,944 + MMJJ_RS01385 0.74 -0.7
267,944 + MMJJ_RS01385 0.74 +3.1
267,946 + MMJJ_RS01385 0.75 -0.3
268,131 - +0.1
268,159 + +1.0
268,159 + +0.1
268,214 + +0.1
268,214 + +2.8
268,215 - -0.3
268,261 - MMJJ_RS01390 0.11 +0.8
268,262 + MMJJ_RS01390 0.11 +0.2
268,314 - MMJJ_RS01390 0.15 -0.3

Or see this region's nucleotide sequence