Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS01315

Experiment: Collected from freezer stock

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMJJ_RS01310 and MMJJ_RS01315 are separated by 10 nucleotidesMMJJ_RS01315 and MMJJ_RS01320 overlap by 1 nucleotides MMJJ_RS01310: MMJJ_RS01310 - phenylacetate--CoA ligase, at 250,283 to 251,581 _RS01310 MMJJ_RS01315: MMJJ_RS01315 - indolepyruvate oxidoreductase subunit beta, at 251,592 to 252,158 _RS01315 MMJJ_RS01320: MMJJ_RS01320 - indolepyruvate ferredoxin oxidoreductase subunit alpha, at 252,158 to 253,894 _RS01320 Position (kb) 251 252 253Strain fitness (log2 ratio) -1 0 1 2 3 4 5at 250.593 kb on + strand, within MMJJ_RS01310at 250.668 kb on + strand, within MMJJ_RS01310at 250.697 kb on - strand, within MMJJ_RS01310at 250.729 kb on - strand, within MMJJ_RS01310at 250.729 kb on - strand, within MMJJ_RS01310at 250.733 kb on - strand, within MMJJ_RS01310at 250.734 kb on + strand, within MMJJ_RS01310at 250.775 kb on + strand, within MMJJ_RS01310at 250.787 kb on + strand, within MMJJ_RS01310at 250.865 kb on - strand, within MMJJ_RS01310at 250.865 kb on - strand, within MMJJ_RS01310at 250.881 kb on - strand, within MMJJ_RS01310at 250.882 kb on + strand, within MMJJ_RS01310at 250.883 kb on - strand, within MMJJ_RS01310at 250.883 kb on - strand, within MMJJ_RS01310at 250.884 kb on + strand, within MMJJ_RS01310at 250.884 kb on + strand, within MMJJ_RS01310at 250.884 kb on + strand, within MMJJ_RS01310at 250.886 kb on + strand, within MMJJ_RS01310at 250.886 kb on + strand, within MMJJ_RS01310at 251.022 kb on - strand, within MMJJ_RS01310at 251.023 kb on + strand, within MMJJ_RS01310at 251.023 kb on + strand, within MMJJ_RS01310at 251.031 kb on - strand, within MMJJ_RS01310at 251.118 kb on + strand, within MMJJ_RS01310at 251.145 kb on - strand, within MMJJ_RS01310at 251.168 kb on + strand, within MMJJ_RS01310at 251.184 kb on - strand, within MMJJ_RS01310at 251.229 kb on + strand, within MMJJ_RS01310at 251.243 kb on - strand, within MMJJ_RS01310at 251.244 kb on + strand, within MMJJ_RS01310at 251.282 kb on - strand, within MMJJ_RS01310at 251.379 kb on + strand, within MMJJ_RS01310at 251.396 kb on + strand, within MMJJ_RS01310at 251.396 kb on + strand, within MMJJ_RS01310at 251.452 kb on - strandat 251.453 kb on + strandat 251.453 kb on + strandat 251.500 kb on - strandat 251.506 kb on - strandat 251.564 kb on + strandat 251.564 kb on + strandat 251.665 kb on + strand, within MMJJ_RS01315at 251.674 kb on + strand, within MMJJ_RS01315at 251.742 kb on - strand, within MMJJ_RS01315at 251.742 kb on - strand, within MMJJ_RS01315at 251.769 kb on - strand, within MMJJ_RS01315at 251.778 kb on - strand, within MMJJ_RS01315at 251.787 kb on + strand, within MMJJ_RS01315at 251.908 kb on + strand, within MMJJ_RS01315at 251.920 kb on - strand, within MMJJ_RS01315at 251.920 kb on - strand, within MMJJ_RS01315at 251.920 kb on - strand, within MMJJ_RS01315at 251.921 kb on + strand, within MMJJ_RS01315at 252.008 kb on - strand, within MMJJ_RS01315at 252.013 kb on - strand, within MMJJ_RS01315at 252.013 kb on - strand, within MMJJ_RS01315at 252.013 kb on - strand, within MMJJ_RS01315at 252.014 kb on + strand, within MMJJ_RS01315at 252.014 kb on + strand, within MMJJ_RS01315at 252.164 kb on - strandat 252.176 kb on - strandat 252.176 kb on - strandat 252.176 kb on - strandat 252.290 kb on - strandat 252.290 kb on - strandat 252.291 kb on + strandat 252.295 kb on - strandat 252.295 kb on - strandat 252.326 kb on + strandat 252.362 kb on - strand, within MMJJ_RS01320at 252.363 kb on + strand, within MMJJ_RS01320at 252.441 kb on + strand, within MMJJ_RS01320at 252.470 kb on + strand, within MMJJ_RS01320at 252.473 kb on - strand, within MMJJ_RS01320at 252.474 kb on + strand, within MMJJ_RS01320at 252.577 kb on - strand, within MMJJ_RS01320at 252.577 kb on - strand, within MMJJ_RS01320at 252.578 kb on + strand, within MMJJ_RS01320at 252.763 kb on - strand, within MMJJ_RS01320at 252.805 kb on + strand, within MMJJ_RS01320at 252.814 kb on - strand, within MMJJ_RS01320at 252.852 kb on - strand, within MMJJ_RS01320at 252.853 kb on + strand, within MMJJ_RS01320at 252.963 kb on + strand, within MMJJ_RS01320at 253.011 kb on + strand, within MMJJ_RS01320at 253.049 kb on + strand, within MMJJ_RS01320at 253.067 kb on - strand, within MMJJ_RS01320at 253.068 kb on + strand, within MMJJ_RS01320at 253.068 kb on + strand, within MMJJ_RS01320at 253.072 kb on + strand, within MMJJ_RS01320

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Per-strain Table

Position Strand Gene LocusTag Fraction Collected from freezer stock
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250,593 + MMJJ_RS01310 0.24 -0.3
250,668 + MMJJ_RS01310 0.30 +0.3
250,697 - MMJJ_RS01310 0.32 -0.8
250,729 - MMJJ_RS01310 0.34 +0.4
250,729 - MMJJ_RS01310 0.34 -0.2
250,733 - MMJJ_RS01310 0.35 +0.4
250,734 + MMJJ_RS01310 0.35 +0.4
250,775 + MMJJ_RS01310 0.38 -0.7
250,787 + MMJJ_RS01310 0.39 +0.3
250,865 - MMJJ_RS01310 0.45 -0.2
250,865 - MMJJ_RS01310 0.45 -1.6
250,881 - MMJJ_RS01310 0.46 -0.4
250,882 + MMJJ_RS01310 0.46 -0.4
250,883 - MMJJ_RS01310 0.46 -0.1
250,883 - MMJJ_RS01310 0.46 +0.4
250,884 + MMJJ_RS01310 0.46 +0.3
250,884 + MMJJ_RS01310 0.46 -0.2
250,884 + MMJJ_RS01310 0.46 -0.1
250,886 + MMJJ_RS01310 0.46 -0.3
250,886 + MMJJ_RS01310 0.46 -0.1
251,022 - MMJJ_RS01310 0.57 +0.4
251,023 + MMJJ_RS01310 0.57 +0.1
251,023 + MMJJ_RS01310 0.57 -0.6
251,031 - MMJJ_RS01310 0.58 +0.2
251,118 + MMJJ_RS01310 0.64 -0.0
251,145 - MMJJ_RS01310 0.66 +0.1
251,168 + MMJJ_RS01310 0.68 +0.0
251,184 - MMJJ_RS01310 0.69 -0.1
251,229 + MMJJ_RS01310 0.73 +0.6
251,243 - MMJJ_RS01310 0.74 -0.1
251,244 + MMJJ_RS01310 0.74 +1.2
251,282 - MMJJ_RS01310 0.77 -0.7
251,379 + MMJJ_RS01310 0.84 -0.2
251,396 + MMJJ_RS01310 0.86 -0.3
251,396 + MMJJ_RS01310 0.86 +0.8
251,452 - +2.4
251,453 + -0.6
251,453 + +0.1
251,500 - +0.1
251,506 - -0.4
251,564 + +0.8
251,564 + +0.3
251,665 + MMJJ_RS01315 0.13 -1.3
251,674 + MMJJ_RS01315 0.14 -0.6
251,742 - MMJJ_RS01315 0.26 +0.1
251,742 - MMJJ_RS01315 0.26 -0.0
251,769 - MMJJ_RS01315 0.31 -0.0
251,778 - MMJJ_RS01315 0.33 -0.2
251,787 + MMJJ_RS01315 0.34 -0.1
251,908 + MMJJ_RS01315 0.56 -0.1
251,920 - MMJJ_RS01315 0.58 -0.6
251,920 - MMJJ_RS01315 0.58 -0.2
251,920 - MMJJ_RS01315 0.58 +0.5
251,921 + MMJJ_RS01315 0.58 -0.6
252,008 - MMJJ_RS01315 0.73 -0.2
252,013 - MMJJ_RS01315 0.74 -0.4
252,013 - MMJJ_RS01315 0.74 +0.5
252,013 - MMJJ_RS01315 0.74 -0.6
252,014 + MMJJ_RS01315 0.74 +4.8
252,014 + MMJJ_RS01315 0.74 +2.2
252,164 - +0.1
252,176 - -0.1
252,176 - -0.7
252,176 - +1.0
252,290 - +1.2
252,290 - -0.3
252,291 + -0.1
252,295 - +0.0
252,295 - +0.8
252,326 + -0.0
252,362 - MMJJ_RS01320 0.12 -0.2
252,363 + MMJJ_RS01320 0.12 -0.1
252,441 + MMJJ_RS01320 0.16 -0.3
252,470 + MMJJ_RS01320 0.18 +0.6
252,473 - MMJJ_RS01320 0.18 +1.3
252,474 + MMJJ_RS01320 0.18 -0.7
252,577 - MMJJ_RS01320 0.24 -0.2
252,577 - MMJJ_RS01320 0.24 +0.1
252,578 + MMJJ_RS01320 0.24 +0.4
252,763 - MMJJ_RS01320 0.35 +0.1
252,805 + MMJJ_RS01320 0.37 -0.4
252,814 - MMJJ_RS01320 0.38 +0.1
252,852 - MMJJ_RS01320 0.40 -0.2
252,853 + MMJJ_RS01320 0.40 +0.5
252,963 + MMJJ_RS01320 0.46 -0.2
253,011 + MMJJ_RS01320 0.49 -0.5
253,049 + MMJJ_RS01320 0.51 +0.1
253,067 - MMJJ_RS01320 0.52 +0.2
253,068 + MMJJ_RS01320 0.52 +0.7
253,068 + MMJJ_RS01320 0.52 -0.4
253,072 + MMJJ_RS01320 0.53 +0.2

Or see this region's nucleotide sequence