Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS08985

Experiment: D-Galactose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA265_RS08975 and CA265_RS08980 are separated by 180 nucleotidesCA265_RS08980 and CA265_RS08985 are separated by 178 nucleotidesCA265_RS08985 and CA265_RS08990 are separated by 343 nucleotides CA265_RS08975: CA265_RS08975 - hypothetical protein, at 2,238,941 to 2,239,489 _RS08975 CA265_RS08980: CA265_RS08980 - 30S ribosomal protein S15, at 2,239,670 to 2,239,954 _RS08980 CA265_RS08985: CA265_RS08985 - polyribonucleotide nucleotidyltransferase, at 2,240,133 to 2,242,268 _RS08985 CA265_RS08990: CA265_RS08990 - ribulose-phosphate 3-epimerase, at 2,242,612 to 2,243,283 _RS08990 Position (kb) 2240 2241 2242 2243Strain fitness (log2 ratio) -1 0 1at 2239.134 kb on - strand, within CA265_RS08975at 2239.134 kb on - strand, within CA265_RS08975at 2239.137 kb on - strand, within CA265_RS08975at 2239.140 kb on + strand, within CA265_RS08975at 2239.193 kb on + strand, within CA265_RS08975at 2239.203 kb on + strand, within CA265_RS08975at 2239.210 kb on + strand, within CA265_RS08975at 2239.241 kb on + strand, within CA265_RS08975at 2239.332 kb on + strand, within CA265_RS08975at 2239.339 kb on + strand, within CA265_RS08975at 2239.340 kb on - strand, within CA265_RS08975at 2239.362 kb on + strand, within CA265_RS08975at 2239.363 kb on - strand, within CA265_RS08975at 2239.394 kb on + strand, within CA265_RS08975at 2239.395 kb on - strand, within CA265_RS08975at 2239.401 kb on - strand, within CA265_RS08975at 2239.402 kb on + strand, within CA265_RS08975at 2239.403 kb on - strand, within CA265_RS08975at 2239.403 kb on - strand, within CA265_RS08975at 2239.418 kb on - strand, within CA265_RS08975at 2239.447 kb on + strandat 2239.448 kb on - strandat 2239.498 kb on - strandat 2239.498 kb on - strandat 2239.516 kb on - strandat 2239.516 kb on - strandat 2239.543 kb on + strandat 2239.545 kb on + strandat 2239.546 kb on - strandat 2239.577 kb on - strandat 2239.577 kb on - strandat 2239.582 kb on - strandat 2240.077 kb on + strandat 2242.347 kb on + strandat 2242.388 kb on + strandat 2242.510 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Galactose (C)
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2,239,134 - CA265_RS08975 0.35 -0.7
2,239,134 - CA265_RS08975 0.35 -0.2
2,239,137 - CA265_RS08975 0.36 +0.7
2,239,140 + CA265_RS08975 0.36 +1.2
2,239,193 + CA265_RS08975 0.46 +0.2
2,239,203 + CA265_RS08975 0.48 +0.0
2,239,210 + CA265_RS08975 0.49 +0.2
2,239,241 + CA265_RS08975 0.55 -0.5
2,239,332 + CA265_RS08975 0.71 -0.7
2,239,339 + CA265_RS08975 0.72 +0.8
2,239,340 - CA265_RS08975 0.73 -1.2
2,239,362 + CA265_RS08975 0.77 +0.4
2,239,363 - CA265_RS08975 0.77 +0.5
2,239,394 + CA265_RS08975 0.83 -0.8
2,239,395 - CA265_RS08975 0.83 -0.5
2,239,401 - CA265_RS08975 0.84 -0.1
2,239,402 + CA265_RS08975 0.84 -0.6
2,239,403 - CA265_RS08975 0.84 -0.2
2,239,403 - CA265_RS08975 0.84 +0.1
2,239,418 - CA265_RS08975 0.87 +0.7
2,239,447 + -0.7
2,239,448 - +0.3
2,239,498 - +0.9
2,239,498 - +0.3
2,239,516 - -1.2
2,239,516 - -0.3
2,239,543 + +0.2
2,239,545 + -0.6
2,239,546 - -0.0
2,239,577 - +0.2
2,239,577 - +1.0
2,239,582 - -0.5
2,240,077 + +0.1
2,242,347 + +0.2
2,242,388 + -0.4
2,242,510 - -0.3

Or see this region's nucleotide sequence