Experiment: LB, pH6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS03095 and BPHYT_RS03100 overlap by 31 nucleotides BPHYT_RS03100 and BPHYT_RS03105 are separated by 137 nucleotides
BPHYT_RS03095: BPHYT_RS03095 - alpha/beta hydrolase, at 692,694 to 693,650
_RS03095
BPHYT_RS03100: BPHYT_RS03100 - peptidase, at 693,620 to 694,462
_RS03100
BPHYT_RS03105: BPHYT_RS03105 - DSBA oxidoreductase, at 694,600 to 696,195
_RS03105
Position (kb) 693
694
695 Strain fitness (log2 ratio) -1
0
1 at 692.621 kb on - strand at 692.621 kb on - strand at 692.621 kb on - strand at 692.659 kb on - strand at 692.958 kb on + strand, within BPHYT_RS03095 at 692.958 kb on + strand, within BPHYT_RS03095 at 692.959 kb on - strand, within BPHYT_RS03095 at 692.992 kb on + strand, within BPHYT_RS03095 at 692.992 kb on + strand, within BPHYT_RS03095 at 693.039 kb on + strand, within BPHYT_RS03095 at 693.040 kb on - strand, within BPHYT_RS03095 at 693.651 kb on + strand at 693.652 kb on - strand at 693.679 kb on - strand at 693.749 kb on - strand, within BPHYT_RS03100 at 693.951 kb on + strand, within BPHYT_RS03100 at 694.537 kb on + strand at 694.537 kb on + strand at 694.556 kb on - strand at 694.644 kb on - strand at 694.738 kb on - strand at 694.771 kb on + strand, within BPHYT_RS03105 at 694.792 kb on + strand, within BPHYT_RS03105 at 694.793 kb on - strand at 694.793 kb on - strand, within BPHYT_RS03105 at 694.843 kb on + strand, within BPHYT_RS03105 at 694.846 kb on + strand, within BPHYT_RS03105 at 695.046 kb on - strand, within BPHYT_RS03105 at 695.113 kb on + strand, within BPHYT_RS03105 at 695.113 kb on + strand, within BPHYT_RS03105 at 695.113 kb on + strand, within BPHYT_RS03105 at 695.114 kb on - strand, within BPHYT_RS03105
Per-strain Table
Position Strand Gene LocusTag Fraction LB, pH6 remove 692,621 - +0.7 692,621 - +0.8 692,621 - +0.1 692,659 - +0.3 692,958 + BPHYT_RS03095 0.28 -0.2 692,958 + BPHYT_RS03095 0.28 -0.0 692,959 - BPHYT_RS03095 0.28 -1.6 692,992 + BPHYT_RS03095 0.31 -0.3 692,992 + BPHYT_RS03095 0.31 +1.2 693,039 + BPHYT_RS03095 0.36 -0.3 693,040 - BPHYT_RS03095 0.36 +0.4 693,651 + +0.4 693,652 - +0.4 693,679 - +1.1 693,749 - BPHYT_RS03100 0.15 -0.2 693,951 + BPHYT_RS03100 0.39 -1.0 694,537 + -0.1 694,537 + -0.8 694,556 - -0.8 694,644 - +0.1 694,738 - -0.0 694,771 + BPHYT_RS03105 0.11 -1.6 694,792 + BPHYT_RS03105 0.12 +0.8 694,793 - -0.2 694,793 - BPHYT_RS03105 0.12 +0.1 694,843 + BPHYT_RS03105 0.15 +0.6 694,846 + BPHYT_RS03105 0.15 +0.7 695,046 - BPHYT_RS03105 0.28 +0.6 695,113 + BPHYT_RS03105 0.32 -0.0 695,113 + BPHYT_RS03105 0.32 -1.0 695,113 + BPHYT_RS03105 0.32 -0.2 695,114 - BPHYT_RS03105 0.32 +0.7
Or see this region's nucleotide sequence