Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS19390

Experiment: CDM1 without Serine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	CDM1 without Serine
2,132,392	+				-0.3
2,132,407	+				+0.3
2,132,407	+				-1.4
2,132,407	+				-0.6
2,132,409	+				-0.7
2,132,409	+				-0.5
2,132,409	+				+0.5
2,132,415	-				-0.5
2,132,417	-				-0.6
2,132,417	-				-0.3
2,132,417	-				-0.2
2,132,530	+				+0.5
2,132,530	+				+0.8
2,132,550	+				+0.8
2,132,550	+				-2.2
2,132,550	+				+0.5
2,132,550	+				+1.3
2,132,560	-				+0.3
2,132,560	-				-2.0
2,132,565	+				+0.2
2,132,583	+				+0.7
2,132,583	+				-0.1
2,132,583	+				-0.0
2,132,595	+				-0.0
2,132,603	-				-0.5
2,132,603	-				-1.6
2,132,624	+				+0.1
2,132,666	+				+1.0
2,132,673	-				+0.1
2,132,675	-				-0.6
2,132,700	+				-2.7
2,132,708	-				-0.5
2,132,708	-				-0.1
2,132,711	+				-0.5
2,132,711	+				+0.3
2,132,711	+				+0.4
2,132,711	+				-0.0
2,132,714	-				+0.4
2,132,718	-				+0.5
2,132,718	-				-0.3
2,132,719	-				+0.2
2,132,752	-				-0.1
2,132,768	+				+0.1
2,132,768	+				+0.8
2,132,771	+				+0.1
2,132,773	+				+1.0
2,132,773	+				+1.3
2,132,773	+				+0.8
2,132,773	+				-0.1
2,132,773	+				+1.5
2,132,773	+				-0.3
2,132,773	+				+1.0
2,132,773	+				-0.1
2,132,774	-				+1.1
2,132,780	+				+0.8
2,132,781	-				+0.4
2,132,781	-				-2.2
2,132,781	-				-1.5
2,132,781	-				-0.1
2,132,781	-				-0.9
2,132,781	-				+0.8
2,132,781	-				-0.2
2,132,781	-				+0.9
2,132,781	-				-0.1
2,132,781	-				-1.9
2,132,796	+				+1.0
2,132,800	+				-0.4
2,132,809	+				+0.6
2,132,815	-				+0.2
2,132,817	-				+0.5
2,132,883	-		BBR_RS19385	0.15	-1.7
2,132,884	+		BBR_RS19385	0.15	+1.3
2,132,884	+		BBR_RS19385	0.15	+0.6
2,132,884	+		BBR_RS19385	0.15	-0.3
2,132,892	-		BBR_RS19385	0.17	-0.4
2,132,892	-		BBR_RS19385	0.17	+1.6
2,132,892	-		BBR_RS19385	0.17	+0.2
2,132,892	-		BBR_RS19385	0.17	+0.8
2,132,892	-		BBR_RS19385	0.17	-0.5
2,132,913	-		BBR_RS19385	0.20	+0.2
2,132,931	-		BBR_RS19385	0.23	-1.0
2,132,933	+		BBR_RS19385	0.24	+1.4
2,132,933	+		BBR_RS19385	0.24	+0.3
2,132,933	+		BBR_RS19385	0.24	-0.7
2,132,935	+		BBR_RS19385	0.24	+0.3
2,132,936	-		BBR_RS19385	0.24	+0.8
2,132,938	+		BBR_RS19385	0.24	-0.0
2,132,941	-		BBR_RS19385	0.25	+0.1
2,132,942	+		BBR_RS19385	0.25	+0.0
2,132,945	+		BBR_RS19385	0.26	+0.4
2,132,950	+		BBR_RS19385	0.27	-0.1
2,132,957	+		BBR_RS19385	0.28	-0.1
2,132,957	+		BBR_RS19385	0.28	+0.7
2,132,958	-		BBR_RS19385	0.28	+1.2
2,132,958	-		BBR_RS19385	0.28	+0.4
2,132,965	-		BBR_RS19385	0.29	+0.8
2,132,977	+		BBR_RS19385	0.31	-0.1
2,132,977	+		BBR_RS19385	0.31	+0.6
2,132,988	+		BBR_RS19385	0.33	+1.7
2,132,988	+		BBR_RS19385	0.33	+0.8
2,133,003	-		BBR_RS19385	0.35	+0.1
2,133,012	-		BBR_RS19385	0.37	-0.3
2,133,017	+		BBR_RS19385	0.38	+1.8
2,133,030	+		BBR_RS19385	0.40	+0.5
2,133,034	+		BBR_RS19385	0.41	-2.7
2,133,034	+		BBR_RS19385	0.41	+0.5
2,133,044	+		BBR_RS19385	0.42	-1.3
2,133,046	+		BBR_RS19385	0.42	+1.0
2,133,079	+		BBR_RS19385	0.48	-0.2
2,133,079	+		BBR_RS19385	0.48	+0.3
2,133,156	+		BBR_RS19385	0.61	+0.8
2,133,156	+		BBR_RS19385	0.61	+0.6
2,133,156	+		BBR_RS19385	0.61	+0.5
2,133,157	+		BBR_RS19385	0.61	-1.7
2,133,157	+		BBR_RS19385	0.61	-3.4
2,133,164	-		BBR_RS19385	0.62	-0.1
2,133,164	-		BBR_RS19385	0.62	-2.3
2,133,164	-		BBR_RS19385	0.62	+0.4
2,133,164	-		BBR_RS19385	0.62	+0.0
2,133,164	-		BBR_RS19385	0.62	+0.3
2,133,164	-		BBR_RS19385	0.62	-1.2
2,133,164	-		BBR_RS19385	0.62	-0.0
2,133,164	-		BBR_RS19385	0.62	+0.9
2,133,164	-		BBR_RS19385	0.62	+0.3
2,133,164	-		BBR_RS19385	0.62	+0.3
2,133,184	+		BBR_RS19385	0.66	-0.1
2,133,196	+		BBR_RS19385	0.68	+1.0
2,133,227	-		BBR_RS19385	0.73	-0.4
2,133,227	-		BBR_RS19385	0.73	-1.3
2,133,227	-		BBR_RS19385	0.73	-0.5
2,133,232	+		BBR_RS19385	0.73	+0.3
2,133,244	+		BBR_RS19385	0.76	+0.7
2,133,244	+		BBR_RS19385	0.76	+0.5
2,133,245	-		BBR_RS19385	0.76	+0.3
2,133,245	-		BBR_RS19385	0.76	-0.5
2,133,245	-		BBR_RS19385	0.76	+0.3
2,133,246	-		BBR_RS19385	0.76	+0.2
2,133,246	-		BBR_RS19385	0.76	+0.0
2,133,246	-		BBR_RS19385	0.76	-0.1
2,133,246	-		BBR_RS19385	0.76	-0.3
2,133,253	-		BBR_RS19385	0.77	-4.6
2,133,263	+		BBR_RS19385	0.79	-0.2
2,133,268	+		BBR_RS19385	0.80	+0.2
2,133,268	+		BBR_RS19385	0.80	+0.4
2,133,268	+		BBR_RS19385	0.80	-0.6
2,133,276	-		BBR_RS19385	0.81	+1.6
2,133,285	+		BBR_RS19385	0.82	-0.9
2,133,293	+		BBR_RS19385	0.84	+0.4
2,133,333	+				+0.8
2,133,341	-				-1.6
2,133,341	-				+0.3
2,133,351	-				-0.3
2,133,362	+				-1.4
2,133,372	+				+0.5
2,133,380	-				-0.5
2,133,380	-				+0.3
2,133,380	-				+0.2
2,133,380	-				+0.8
2,133,380	-				-0.8
2,133,380	-				+0.5
2,133,380	-				-0.4
2,133,380	-				+1.3
2,133,380	-				-0.3
2,133,380	-				+0.5
2,133,389	+				-1.8
2,133,397	-				-0.3
2,133,682	-		BBR_RS19390	0.33	-1.6
2,133,822	-		BBR_RS19390	0.48	+0.0
2,134,020	+		BBR_RS19390	0.70	+0.0
2,134,020	+		BBR_RS19390	0.70	+0.3
2,134,020	+		BBR_RS19390	0.70	-1.0
2,134,204	+				-2.0
2,134,217	+				-2.6
2,134,235	-				+1.4
2,134,239	+				-1.9
2,134,247	-				-1.1
2,134,285	+				+0.3
2,134,285	+				-0.3
2,134,285	+				-0.9
2,134,290	+				+0.4
2,134,295	+				+1.7
2,134,295	+				-0.7
2,134,364	+				-1.7
2,134,366	+				+1.2
2,134,395	+				+0.3
2,134,395	+				+0.1
2,134,395	+				+0.6
2,134,403	-				-0.3
2,134,403	-				+0.8
2,134,426	-				-0.7
2,134,460	+				-0.6
2,134,479	+				+0.3
2,134,481	+				+0.9
2,134,494	-				-1.2
2,134,494	-				-1.0
2,134,495	+				-0.9
2,134,495	+				-0.1
2,134,502	+				-1.4
2,134,502	+				-1.3
2,134,503	-				+0.3
2,134,503	-				-2.4
2,134,503	-				-1.9
2,134,513	+				+1.1
2,134,513	+				+0.9
2,134,523	+				+0.7
2,134,523	+				+0.2
2,134,531	-				-1.1
2,134,609	+				-1.7
2,134,626	-				-3.9
2,134,626	-				-3.5
2,134,864	+		BBR_RS19395	0.16	-0.2
2,134,902	-		BBR_RS19395	0.18	-3.7
2,134,931	+		BBR_RS19395	0.19	-1.2