Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS18960

Experiment: CDM1 without Serine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	CDM1 without Serine
2,030,257	-		BBR_RS18955	0.85	-2.9
2,030,303	-		BBR_RS18955	0.86	-2.6
2,030,355	-		BBR_RS18955	0.88	-3.3
2,030,399	-		BBR_RS18955	0.90	-4.3
2,030,456	-				-3.8
2,030,482	-				-4.7
2,030,500	-				-3.5
2,030,505	-				-3.2
2,030,517	-				-3.9
2,030,545	-				-4.7
2,030,555	-				-3.5
2,030,573	+				-3.1
2,030,574	-				-4.1
2,030,581	-				-2.7
2,030,581	-				-2.5
2,030,595	-				-3.5
2,030,616	-				-2.8
2,030,623	-				-3.2
2,030,677	+				-4.1
2,030,690	+				-3.2
2,030,714	-				-2.5
2,030,718	+				-2.1
2,030,718	+				-0.6
2,030,720	+				-4.5
2,030,726	-				-0.1
2,030,726	-				+0.5
2,030,737	+				-3.9
2,030,755	-				-0.4
2,030,758	+				-2.5
2,030,759	+				-1.0
2,030,765	+				-3.2
2,030,765	+				-2.3
2,030,765	+				-3.5
2,030,767	-				+0.7
2,030,767	-				-1.5
2,030,797	-				+0.6
2,030,814	+				-2.5
2,030,822	-				+0.5
2,030,843	-				-0.4
2,031,001	+				+1.2
2,031,001	-				-0.6
2,031,194	-				-0.5
2,031,199	+				-0.7
2,031,199	+				-0.1
2,031,199	+				-0.7
2,031,253	-				-0.6
2,031,260	+				-2.5
2,031,260	+				-0.4
2,031,274	-				-1.3
2,031,303	+				+0.7
2,031,305	+				-0.0
2,031,309	+				-0.0
2,031,315	+				+0.2
2,031,315	+				-0.2
2,031,316	-				-0.9
2,031,317	-				-1.5
2,031,320	+				-0.7
2,031,322	-				-0.6
2,031,324	+		BBR_RS18960	0.10	+0.8
2,031,324	+		BBR_RS18960	0.10	-0.3
2,031,327	-		BBR_RS18960	0.10	-0.5
2,031,330	+		BBR_RS18960	0.11	-1.2
2,031,330	+		BBR_RS18960	0.11	-0.6
2,031,330	+		BBR_RS18960	0.11	-0.1
2,031,337	+		BBR_RS18960	0.11	-0.2
2,031,338	-		BBR_RS18960	0.11	-0.3
2,031,378	+		BBR_RS18960	0.15	+0.7
2,031,380	+		BBR_RS18960	0.15	-2.1
2,031,385	+		BBR_RS18960	0.16	-0.1
2,031,393	-		BBR_RS18960	0.16	-3.8
2,031,407	+		BBR_RS18960	0.17	-0.6
2,031,407	+		BBR_RS18960	0.17	+0.4
2,031,415	-		BBR_RS18960	0.18	-0.0
2,031,415	-		BBR_RS18960	0.18	-0.1
2,031,421	+		BBR_RS18960	0.19	+0.3
2,031,421	+		BBR_RS18960	0.19	+1.1
2,031,421	+		BBR_RS18960	0.19	-0.5
2,031,426	+		BBR_RS18960	0.19	+0.4
2,031,429	-		BBR_RS18960	0.19	-0.1
2,031,429	-		BBR_RS18960	0.19	+0.5
2,031,434	-		BBR_RS18960	0.20	-0.8
2,031,444	+		BBR_RS18960	0.21	+0.4
2,031,446	-		BBR_RS18960	0.21	-2.0
2,031,454	+		BBR_RS18960	0.22	+0.5
2,031,465	-		BBR_RS18960	0.23	+0.2
2,031,473	-		BBR_RS18960	0.23	-1.7
2,031,489	-		BBR_RS18960	0.25	-0.6
2,031,504	-		BBR_RS18960	0.26	-0.7
2,031,504	-		BBR_RS18960	0.26	+1.2
2,031,520	+		BBR_RS18960	0.27	+0.3
2,031,527	+		BBR_RS18960	0.28	-1.1
2,031,532	+		BBR_RS18960	0.28	-0.2
2,031,532	+		BBR_RS18960	0.28	-0.6
2,031,540	-		BBR_RS18960	0.29	-0.3
2,031,544	+		BBR_RS18960	0.30	-1.5
2,031,550	+		BBR_RS18960	0.30	-0.6
2,031,558	-		BBR_RS18960	0.31	-0.9
2,031,560	-		BBR_RS18960	0.31	-1.2
2,031,613	-		BBR_RS18960	0.36	-1.0
2,031,641	+		BBR_RS18960	0.38	+0.1
2,031,641	+		BBR_RS18960	0.38	-0.2
2,031,657	+		BBR_RS18960	0.40	+0.6
2,031,659	+		BBR_RS18960	0.40	-1.1
2,031,661	-		BBR_RS18960	0.40	+0.2
2,031,663	-		BBR_RS18960	0.40	+0.2
2,031,696	-		BBR_RS18960	0.43	+0.2
2,031,702	-		BBR_RS18960	0.43	-0.3
2,031,702	-		BBR_RS18960	0.43	-0.7
2,031,731	+		BBR_RS18960	0.46	-0.1
2,031,739	+		BBR_RS18960	0.47	-0.9
2,031,742	-		BBR_RS18960	0.47	-0.1
2,031,769	+		BBR_RS18960	0.49	+1.0
2,031,771	+		BBR_RS18960	0.50	-0.2
2,031,798	+		BBR_RS18960	0.52	+0.4
2,031,808	+		BBR_RS18960	0.53	+0.6
2,031,882	+		BBR_RS18960	0.59	-0.7
2,031,882	+		BBR_RS18960	0.59	-2.1
2,031,885	-		BBR_RS18960	0.60	-0.4
2,031,889	-		BBR_RS18960	0.60	+2.0
2,031,890	-		BBR_RS18960	0.60	+0.9
2,031,890	-		BBR_RS18960	0.60	-0.7
2,031,910	+		BBR_RS18960	0.62	-0.5
2,031,913	+		BBR_RS18960	0.62	+0.5
2,031,918	+		BBR_RS18960	0.63	-0.0
2,031,926	-		BBR_RS18960	0.63	+0.6
2,031,948	-		BBR_RS18960	0.65	+0.4
2,031,953	+		BBR_RS18960	0.66	+0.2
2,031,970	+		BBR_RS18960	0.67	-0.0
2,031,970	+		BBR_RS18960	0.67	-1.8
2,031,976	-		BBR_RS18960	0.68	+0.3
2,031,981	-		BBR_RS18960	0.68	+0.3
2,031,982	+		BBR_RS18960	0.68	-0.5
2,032,000	+		BBR_RS18960	0.70	-0.3
2,032,009	-		BBR_RS18960	0.71	+1.1
2,032,009	-		BBR_RS18960	0.71	-2.2
2,032,009	-		BBR_RS18960	0.71	-0.5
2,032,023	+		BBR_RS18960	0.72	-2.3
2,032,023	+		BBR_RS18960	0.72	-0.2
2,032,031	-		BBR_RS18960	0.72	+0.6
2,032,032	+		BBR_RS18960	0.73	-0.1
2,032,032	+		BBR_RS18960	0.73	+0.3
2,032,063	-		BBR_RS18960	0.75	-0.4
2,032,064	+		BBR_RS18960	0.75	+0.1
2,032,084	-		BBR_RS18960	0.77	+1.2
2,032,084	-		BBR_RS18960	0.77	+1.0
2,032,089	-		BBR_RS18960	0.78	+1.1
2,032,089	-		BBR_RS18960	0.78	+0.4
2,032,091	+		BBR_RS18960	0.78	-0.8
2,032,125	+		BBR_RS18960	0.81	-0.6
2,032,154	+		BBR_RS18960	0.83	-0.8
2,032,161	+		BBR_RS18960	0.84	-2.0
2,032,163	+		BBR_RS18960	0.84	-0.3
2,032,169	-		BBR_RS18960	0.85	+0.9
2,032,169	-		BBR_RS18960	0.85	-0.6
2,032,169	-		BBR_RS18960	0.85	+1.2
2,032,171	-		BBR_RS18960	0.85	+0.6
2,032,171	-		BBR_RS18960	0.85	+0.4
2,032,216	+		BBR_RS18960	0.89	-0.8
2,032,224	-		BBR_RS18960	0.90	+0.4
2,032,229	-				+0.2
2,032,254	-				+0.3
2,032,257	+				+0.9
2,032,257	-				-0.2
2,032,257	-				+0.4
2,032,323	-				+0.8
2,032,408	+				+0.2
2,032,442	-				+0.3
2,032,447	-				+0.6
2,032,447	-				+0.7
2,032,467	-				-0.6
2,032,491	+				+0.5
2,032,494	-				-0.6
2,032,496	+				+1.0
2,032,502	+				-0.0
2,032,509	-				+0.4
2,032,524	+				+1.0
2,032,529	+				+0.2
2,032,529	+				-0.0
2,032,534	+				+0.5
2,032,534	+				-0.2
2,032,534	+				-0.0
2,032,537	-				-2.0
2,032,557	+				+0.2
2,032,587	+				+0.7
2,032,629	+				+0.8
2,032,629	+				+0.5
2,032,637	-				+1.6
2,032,648	-				+1.2
2,032,655	+		BBR_RS18965	0.10	+0.3
2,032,655	+		BBR_RS18965	0.10	+0.7
2,032,655	+		BBR_RS18965	0.10	+0.2
2,032,671	-		BBR_RS18965	0.11	+0.6
2,032,680	+		BBR_RS18965	0.11	+0.0
2,032,685	+		BBR_RS18965	0.11	+1.3
2,032,688	-		BBR_RS18965	0.11	+0.3
2,032,693	-		BBR_RS18965	0.12	+0.6
2,032,695	+		BBR_RS18965	0.12	-1.0
2,032,703	-		BBR_RS18965	0.12	+0.8
2,032,705	+		BBR_RS18965	0.12	-0.3
2,032,705	+		BBR_RS18965	0.12	+0.5
2,032,705	+		BBR_RS18965	0.12	-0.3
2,032,708	-		BBR_RS18965	0.12	-0.9
2,032,713	-		BBR_RS18965	0.12	+1.0
2,032,713	-		BBR_RS18965	0.12	+0.3
2,032,713	-		BBR_RS18965	0.12	+0.3
2,032,713	-		BBR_RS18965	0.12	+1.3
2,032,713	-		BBR_RS18965	0.12	+0.0
2,032,757	-		BBR_RS18965	0.14	-0.1
2,032,757	-		BBR_RS18965	0.14	-0.4
2,032,758	+		BBR_RS18965	0.14	+0.0
2,032,784	-		BBR_RS18965	0.15	+1.0
2,032,794	-		BBR_RS18965	0.16	+0.3
2,032,817	+		BBR_RS18965	0.17	-0.4
2,032,818	-		BBR_RS18965	0.17	-0.1
2,032,825	-		BBR_RS18965	0.17	+1.6
2,032,835	+		BBR_RS18965	0.17	+1.1
2,032,838	-		BBR_RS18965	0.17	+0.4
2,032,840	+		BBR_RS18965	0.17	-0.2
2,032,840	+		BBR_RS18965	0.17	+0.6
2,032,885	+		BBR_RS18965	0.19	-1.9
2,032,885	+		BBR_RS18965	0.19	+0.6
2,032,885	+		BBR_RS18965	0.19	-1.2
2,032,886	+		BBR_RS18965	0.19	+0.2
2,032,893	-		BBR_RS18965	0.20	+1.1
2,032,893	-		BBR_RS18965	0.20	+1.1
2,032,893	-		BBR_RS18965	0.20	+0.0
2,032,896	-		BBR_RS18965	0.20	+0.9
2,032,907	+		BBR_RS18965	0.20	+1.2
2,032,915	-		BBR_RS18965	0.20	+0.4
2,032,917	-		BBR_RS18965	0.21	-0.8
2,032,925	-		BBR_RS18965	0.21	-0.3
2,032,970	+		BBR_RS18965	0.23	+0.1
2,032,978	+		BBR_RS18965	0.23	+0.2
2,032,978	-		BBR_RS18965	0.23	+0.6
2,032,991	-		BBR_RS18965	0.23	+0.2
2,032,998	+		BBR_RS18965	0.24	-0.8
2,033,004	-		BBR_RS18965	0.24	+0.4
2,033,004	-		BBR_RS18965	0.24	+0.4
2,033,006	-		BBR_RS18965	0.24	+1.5
2,033,006	-		BBR_RS18965	0.24	+0.2
2,033,006	-		BBR_RS18965	0.24	+2.1
2,033,007	-		BBR_RS18965	0.24	+0.5
2,033,055	-		BBR_RS18965	0.26	+0.0
2,033,058	+		BBR_RS18965	0.26	+0.2
2,033,064	+		BBR_RS18965	0.26	-0.4
2,033,064	+		BBR_RS18965	0.26	+1.9
2,033,066	+		BBR_RS18965	0.26	-1.0
2,033,066	+		BBR_RS18965	0.26	+0.7
2,033,072	-		BBR_RS18965	0.27	+0.5
2,033,081	+		BBR_RS18965	0.27	-0.9
2,033,082	-		BBR_RS18965	0.27	+0.7
2,033,086	+		BBR_RS18965	0.27	+0.6
2,033,089	-		BBR_RS18965	0.27	+0.6
2,033,089	-		BBR_RS18965	0.27	+0.7
2,033,089	-		BBR_RS18965	0.27	-0.7
2,033,089	-		BBR_RS18965	0.27	+0.9
2,033,110	-		BBR_RS18965	0.28	-1.7
2,033,146	-		BBR_RS18965	0.30	+1.3
2,033,146	-		BBR_RS18965	0.30	+1.4
2,033,154	+		BBR_RS18965	0.30	+1.4
2,033,157	-		BBR_RS18965	0.30	+0.8
2,033,157	-		BBR_RS18965	0.30	+0.9
2,033,162	-		BBR_RS18965	0.30	+1.8
2,033,185	-		BBR_RS18965	0.31	+0.2
2,033,204	+		BBR_RS18965	0.32	-0.7
2,033,227	-		BBR_RS18965	0.33	+0.6
2,033,232	+		BBR_RS18965	0.33	-1.0
2,033,232	+		BBR_RS18965	0.33	-0.1
2,033,242	+		BBR_RS18965	0.33	+0.4
2,033,245	-		BBR_RS18965	0.34	+0.3
2,033,247	+		BBR_RS18965	0.34	+1.2
2,033,263	+		BBR_RS18965	0.34	-0.8
2,033,280	-		BBR_RS18965	0.35	-1.2
2,033,280	-		BBR_RS18965	0.35	+0.6
2,033,287	+		BBR_RS18965	0.35	-3.1
2,033,295	-		BBR_RS18965	0.36	+0.4
2,033,317	+		BBR_RS18965	0.36	-0.3
2,033,318	+		BBR_RS18965	0.36	+0.0
2,033,334	-		BBR_RS18965	0.37	+0.5
2,033,341	+		BBR_RS18965	0.37	-0.0
2,033,341	+		BBR_RS18965	0.37	+1.2