Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS17010

Experiment: CDM1 without Serine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	CDM1 without Serine
1,587,320	+		BBR_RS17000	0.86	+1.4
1,587,439	+				-0.0
1,587,452	-				-0.1
1,587,475	+				-0.7
1,587,524	+				-0.4
1,587,524	+				-1.4
1,587,524	+				-1.3
1,587,532	-				+1.6
1,587,648	+				+0.5
1,587,684	+				+1.8
1,587,704	+				+1.0
1,587,712	-				+0.4
1,587,718	-		BBR_RS17005	0.10	-0.2
1,587,718	-		BBR_RS17005	0.10	+0.2
1,587,724	+		BBR_RS17005	0.11	+2.3
1,587,735	-		BBR_RS17005	0.13	+0.4
1,587,788	+		BBR_RS17005	0.21	+1.8
1,587,788	+		BBR_RS17005	0.21	+1.0
1,587,835	+		BBR_RS17005	0.28	+1.0
1,587,854	-		BBR_RS17005	0.31	-1.2
1,587,859	+		BBR_RS17005	0.32	+1.2
1,587,892	+		BBR_RS17005	0.37	+1.3
1,587,903	+		BBR_RS17005	0.38	+1.1
1,587,911	-		BBR_RS17005	0.39	-0.2
1,587,918	-		BBR_RS17005	0.40	-0.1
1,587,932	+		BBR_RS17005	0.43	+1.0
1,587,954	+		BBR_RS17005	0.46	-0.9
1,587,954	+		BBR_RS17005	0.46	-0.4
1,587,987	-		BBR_RS17005	0.51	-0.6
1,587,994	-		BBR_RS17005	0.52	+0.5
1,588,122	-		BBR_RS17005	0.72	+1.0
1,588,126	-		BBR_RS17005	0.72	+1.3
1,588,128	+		BBR_RS17005	0.72	+0.5
1,588,128	+		BBR_RS17005	0.72	-1.8
1,588,133	+		BBR_RS17005	0.73	+1.4
1,588,136	-		BBR_RS17005	0.74	+0.6
1,588,136	-		BBR_RS17005	0.74	-0.4
1,588,149	+		BBR_RS17005	0.76	+2.1
1,588,220	-		BBR_RS17005	0.86	+1.2
1,588,274	-				+1.9
1,588,391	+				+0.6
1,588,598	-				+1.2
1,588,620	+				-0.3
1,588,628	-				+1.5
1,588,628	-				+1.4
1,588,639	+				+1.4
1,588,647	-				+1.1
1,588,703	+				+1.6
1,588,739	+		BBR_RS17010	0.11	+1.8
1,588,739	+		BBR_RS17010	0.11	+0.2
1,588,761	+		BBR_RS17010	0.11	+0.6
1,588,867	+		BBR_RS17010	0.14	+1.4
1,588,875	+		BBR_RS17010	0.14	+1.4
1,588,875	-		BBR_RS17010	0.14	+0.4
1,588,897	+		BBR_RS17010	0.14	+1.8
1,588,903	-		BBR_RS17010	0.15	+1.4
1,588,913	+		BBR_RS17010	0.15	+0.3
1,588,916	-		BBR_RS17010	0.15	+1.2
1,588,928	+		BBR_RS17010	0.15	+2.0
1,588,928	-		BBR_RS17010	0.15	+1.2
1,589,067	+		BBR_RS17010	0.19	-2.6
1,589,080	-		BBR_RS17010	0.19	+0.9
1,589,086	-		BBR_RS17010	0.19	+0.9
1,589,088	+		BBR_RS17010	0.19	+1.3
1,589,088	+		BBR_RS17010	0.19	+0.8
1,589,109	+		BBR_RS17010	0.20	+1.4
1,589,109	+		BBR_RS17010	0.20	+1.7
1,589,128	+		BBR_RS17010	0.20	+1.2
1,589,156	-		BBR_RS17010	0.21	+0.5
1,589,173	-		BBR_RS17010	0.21	+1.0
1,589,242	+		BBR_RS17010	0.23	+1.4
1,589,263	+		BBR_RS17010	0.23	+1.7
1,589,290	+		BBR_RS17010	0.24	-0.2
1,589,306	+		BBR_RS17010	0.24	+1.4
1,589,367	+		BBR_RS17010	0.26	+1.6
1,589,415	+		BBR_RS17010	0.27	-0.0
1,589,423	-		BBR_RS17010	0.27	+1.3
1,589,436	-		BBR_RS17010	0.28	+3.2
1,589,455	+		BBR_RS17010	0.28	+2.0
1,589,458	-		BBR_RS17010	0.28	-0.1
1,589,482	+		BBR_RS17010	0.29	+1.3
1,589,487	+		BBR_RS17010	0.29	+1.3
1,589,522	-		BBR_RS17010	0.30	+1.6
1,589,560	+		BBR_RS17010	0.31	+2.0
1,589,569	+		BBR_RS17010	0.31	+1.5
1,589,569	-		BBR_RS17010	0.31	+1.9
1,589,586	+		BBR_RS17010	0.31	+2.3
1,589,610	+		BBR_RS17010	0.32	+0.9
1,589,615	+		BBR_RS17010	0.32	-0.8
1,589,616	-		BBR_RS17010	0.32	-0.4
1,589,623	-		BBR_RS17010	0.32	+1.5
1,589,671	+		BBR_RS17010	0.33	+1.3
1,589,679	-		BBR_RS17010	0.33	+0.7
1,589,683	+		BBR_RS17010	0.33	+1.0
1,589,691	+		BBR_RS17010	0.34	+1.4
1,589,710	+		BBR_RS17010	0.34	+1.7
1,589,725	-		BBR_RS17010	0.34	+2.5
1,589,753	-		BBR_RS17010	0.35	-0.3
1,589,753	-		BBR_RS17010	0.35	+0.4
1,589,755	+		BBR_RS17010	0.35	-2.0
1,589,759	-		BBR_RS17010	0.35	+1.6
1,589,792	+		BBR_RS17010	0.36	-0.5
1,589,800	-		BBR_RS17010	0.36	+1.9
1,589,807	+		BBR_RS17010	0.36	+1.7
1,589,865	-		BBR_RS17010	0.38	+1.1
1,589,865	-		BBR_RS17010	0.38	+1.0
1,589,980	-		BBR_RS17010	0.41	+1.6
1,590,034	-		BBR_RS17010	0.42	+1.4
1,590,086	+		BBR_RS17010	0.43	+1.5
1,590,113	-		BBR_RS17010	0.44	+0.5
1,590,127	-		BBR_RS17010	0.44	+1.2
1,590,153	-		BBR_RS17010	0.45	+0.9
1,590,164	+		BBR_RS17010	0.45	+1.6
1,590,209	+		BBR_RS17010	0.46	+0.6
1,590,219	+		BBR_RS17010	0.46	+1.2
1,590,227	-		BBR_RS17010	0.47	+0.6
1,590,279	+		BBR_RS17010	0.48	+1.1
1,590,279	+		BBR_RS17010	0.48	+0.5
1,590,285	-		BBR_RS17010	0.48	+1.9
1,590,322	+		BBR_RS17010	0.49	+2.0
1,590,330	-		BBR_RS17010	0.49	-0.9
1,590,330	-		BBR_RS17010	0.49	+0.6
1,590,330	-		BBR_RS17010	0.49	+2.1
1,590,335	+		BBR_RS17010	0.49	+0.3
1,590,447	+		BBR_RS17010	0.52	+1.8
1,590,472	+		BBR_RS17010	0.53	-1.0
1,590,480	-		BBR_RS17010	0.53	+1.3
1,590,480	-		BBR_RS17010	0.53	+1.5
1,590,480	-		BBR_RS17010	0.53	+0.9
1,590,485	+		BBR_RS17010	0.53	+0.9
1,590,501	-		BBR_RS17010	0.53	+0.8
1,590,501	-		BBR_RS17010	0.53	+0.8
1,590,523	-		BBR_RS17010	0.54	+1.4
1,590,523	-		BBR_RS17010	0.54	+1.0
1,590,528	-		BBR_RS17010	0.54	+0.1
1,590,564	+		BBR_RS17010	0.55	+0.9
1,590,577	-		BBR_RS17010	0.55	-1.1
1,590,587	-		BBR_RS17010	0.55	+1.1
1,590,622	+		BBR_RS17010	0.56	+0.3
1,590,622	+		BBR_RS17010	0.56	-0.3
1,590,622	+		BBR_RS17010	0.56	+1.7
1,590,625	-		BBR_RS17010	0.56	+1.5
1,590,630	-		BBR_RS17010	0.56	+0.9
1,590,630	-		BBR_RS17010	0.56	+1.2
1,590,630	-		BBR_RS17010	0.56	+0.6
1,590,641	+		BBR_RS17010	0.57	+1.7
1,590,641	+		BBR_RS17010	0.57	+0.7
1,590,649	-		BBR_RS17010	0.57	+0.6
1,590,654	-		BBR_RS17010	0.57	+1.4
1,590,654	-		BBR_RS17010	0.57	+1.9
1,590,660	+		BBR_RS17010	0.57	+1.7
1,590,734	-		BBR_RS17010	0.59	+0.3
1,590,734	-		BBR_RS17010	0.59	+1.7
1,590,820	+		BBR_RS17010	0.61	-0.3
1,590,827	+		BBR_RS17010	0.61	+0.8
1,590,873	+		BBR_RS17010	0.62	+0.2
1,590,878	+		BBR_RS17010	0.62	+0.4
1,590,886	-		BBR_RS17010	0.63	+0.7
1,590,886	-		BBR_RS17010	0.63	-0.5
1,590,996	+		BBR_RS17010	0.65	+0.7
1,591,024	+		BBR_RS17010	0.66	+2.2
1,591,047	+		BBR_RS17010	0.66	+0.4
1,591,053	-		BBR_RS17010	0.67	+1.2
1,591,066	-		BBR_RS17010	0.67	+1.9
1,591,190	-		BBR_RS17010	0.70	+1.5
1,591,198	+		BBR_RS17010	0.70	+2.1
1,591,198	+		BBR_RS17010	0.70	+1.0
1,591,206	-		BBR_RS17010	0.70	+1.6
1,591,206	-		BBR_RS17010	0.70	-0.7
1,591,206	-		BBR_RS17010	0.70	+1.0
1,591,206	-		BBR_RS17010	0.70	+1.9
1,591,282	+		BBR_RS17010	0.72	+1.2
1,591,290	-		BBR_RS17010	0.72	+0.9
1,591,358	-		BBR_RS17010	0.74	+1.8
1,591,361	+		BBR_RS17010	0.74	-0.6
1,591,364	-		BBR_RS17010	0.74	+1.0
1,591,564	-		BBR_RS17010	0.79	+1.0
1,591,581	+		BBR_RS17010	0.79	+2.1
1,591,609	+		BBR_RS17010	0.80	+2.1
1,591,623	-		BBR_RS17010	0.80	+1.3
1,591,646	+		BBR_RS17010	0.81	+0.0
1,591,691	+		BBR_RS17010	0.82	+0.3
1,591,696	+		BBR_RS17010	0.82	+0.8
1,591,726	+		BBR_RS17010	0.83	+0.8
1,591,831	+		BBR_RS17010	0.85	+0.5
1,591,852	+		BBR_RS17010	0.86	+1.8
1,591,860	-		BBR_RS17010	0.86	+1.8
1,591,870	+		BBR_RS17010	0.86	+0.9
1,591,878	-		BBR_RS17010	0.87	+1.0
1,591,927	+		BBR_RS17010	0.88	+1.4
1,591,935	-		BBR_RS17010	0.88	+1.4
1,591,935	-		BBR_RS17010	0.88	+1.7
1,591,955	+		BBR_RS17010	0.88	+1.4
1,591,955	+		BBR_RS17010	0.88	+1.7
1,591,957	+		BBR_RS17010	0.88	+1.7
1,591,961	-		BBR_RS17010	0.89	+2.4
1,591,963	-		BBR_RS17010	0.89	+1.3
1,591,963	-		BBR_RS17010	0.89	+1.4
1,591,967	+		BBR_RS17010	0.89	+1.8
1,592,008	+		BBR_RS17010	0.90	+1.4
1,592,029	+				+2.7
1,592,038	+				+0.2
1,592,058	+				+1.1
1,592,066	+				+1.6
1,592,076	-				+0.6
1,592,109	-				+0.9
1,592,132	-				+1.1
1,592,137	-				+1.8
1,592,154	+				+1.1
1,592,157	+				+0.4
1,592,171	+				+1.3
1,592,295	+				-0.8
1,592,330	-				+0.7
1,592,373	-				+0.1
1,592,436	-				-0.3
1,592,471	+				-0.4
1,592,514	+				-1.1
1,592,522	-				+0.2
1,592,522	-				+0.2
1,592,540	+				-0.1
1,592,540	+				+0.0
1,592,581	-		BBR_RS17015	0.11	+0.5
1,592,591	-		BBR_RS17015	0.12	-0.3
1,592,638	-		BBR_RS17015	0.16	+0.7
1,592,640	+		BBR_RS17015	0.16	-0.5
1,592,651	+		BBR_RS17015	0.17	+0.1
1,592,719	+		BBR_RS17015	0.23	-0.7
1,592,719	+		BBR_RS17015	0.23	-1.1
1,592,751	-		BBR_RS17015	0.26	+0.8
1,592,763	+		BBR_RS17015	0.27	+1.0
1,592,765	-		BBR_RS17015	0.27	+0.4
1,592,816	-		BBR_RS17015	0.31	+0.2
1,592,816	-		BBR_RS17015	0.31	-0.0
1,592,951	-		BBR_RS17015	0.42	-0.3
1,592,956	-		BBR_RS17015	0.43	+0.1
1,592,956	-		BBR_RS17015	0.43	-1.0
1,592,958	-		BBR_RS17015	0.43	-0.6
1,593,057	+		BBR_RS17015	0.51	-0.1
1,593,057	+		BBR_RS17015	0.51	-0.3
1,593,084	-		BBR_RS17015	0.53	-0.3
1,593,099	+		BBR_RS17015	0.54	-0.2
1,593,107	-		BBR_RS17015	0.55	-0.2
1,593,157	-		BBR_RS17015	0.59	+0.6
1,593,157	-		BBR_RS17015	0.59	+0.5
1,593,167	-		BBR_RS17015	0.60	+0.8
1,593,167	-		BBR_RS17015	0.60	+2.3
1,593,167	-		BBR_RS17015	0.60	-0.5
1,593,235	+		BBR_RS17015	0.66	+0.2
1,593,243	-		BBR_RS17015	0.66	+1.8
1,593,277	+		BBR_RS17015	0.69	+1.3
1,593,285	+		BBR_RS17015	0.70	+1.4
1,593,285	+		BBR_RS17015	0.70	+0.4
1,593,322	+		BBR_RS17015	0.73	+0.4
1,593,350	+		BBR_RS17015	0.75	+1.3
1,593,355	-		BBR_RS17015	0.76	+0.2
1,593,365	-		BBR_RS17015	0.76	+0.1
1,593,373	+		BBR_RS17015	0.77	-2.6
1,593,434	-		BBR_RS17015	0.82	-0.2
1,593,434	-		BBR_RS17015	0.82	+0.5