Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS12875

Experiment: CDM1 without Serine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBBR_RS12870 and BBR_RS12875 are separated by 51 nucleotidesBBR_RS12875 and BBR_RS12880 are separated by 111 nucleotidesBBR_RS12880 and BBR_RS12885 are separated by 128 nucleotides BBR_RS12870: BBR_RS12870 - 3-isopropylmalate dehydrogenase, at 637,861 to 638,892 _RS12870 BBR_RS12875: BBR_RS12875 - lipoate--protein ligase A, at 638,944 to 640,107 _RS12875 BBR_RS12880: BBR_RS12880 - Crp/Fnr family transcriptional regulator, at 640,219 to 640,938 _RS12880 BBR_RS12885: BBR_RS12885 - penicillin-binding protein, at 641,067 to 643,337 _RS12885 Position (kb) 638 639 640 641Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 637.951 kb on + strandat 637.975 kb on + strand, within BBR_RS12870at 637.981 kb on - strand, within BBR_RS12870at 638.049 kb on + strand, within BBR_RS12870at 638.068 kb on + strand, within BBR_RS12870at 638.068 kb on + strand, within BBR_RS12870at 638.073 kb on + strand, within BBR_RS12870at 638.073 kb on + strand, within BBR_RS12870at 638.073 kb on + strand, within BBR_RS12870at 638.080 kb on + strand, within BBR_RS12870at 638.081 kb on - strand, within BBR_RS12870at 638.147 kb on + strand, within BBR_RS12870at 638.147 kb on + strand, within BBR_RS12870at 638.147 kb on + strand, within BBR_RS12870at 638.147 kb on + strand, within BBR_RS12870at 638.147 kb on + strand, within BBR_RS12870at 638.155 kb on - strand, within BBR_RS12870at 638.155 kb on - strand, within BBR_RS12870at 638.155 kb on - strand, within BBR_RS12870at 638.155 kb on - strand, within BBR_RS12870at 638.159 kb on + strand, within BBR_RS12870at 638.192 kb on - strand, within BBR_RS12870at 638.199 kb on - strand, within BBR_RS12870at 638.222 kb on - strand, within BBR_RS12870at 638.231 kb on + strand, within BBR_RS12870at 638.231 kb on + strand, within BBR_RS12870at 638.239 kb on - strand, within BBR_RS12870at 638.257 kb on + strand, within BBR_RS12870at 638.257 kb on + strand, within BBR_RS12870at 638.262 kb on + strand, within BBR_RS12870at 638.262 kb on + strand, within BBR_RS12870at 638.262 kb on + strand, within BBR_RS12870at 638.262 kb on + strand, within BBR_RS12870at 638.265 kb on - strand, within BBR_RS12870at 638.265 kb on - strand, within BBR_RS12870at 638.270 kb on - strand, within BBR_RS12870at 638.282 kb on - strand, within BBR_RS12870at 638.282 kb on - strand, within BBR_RS12870at 638.287 kb on - strand, within BBR_RS12870at 638.287 kb on - strand, within BBR_RS12870at 638.289 kb on + strand, within BBR_RS12870at 638.297 kb on + strand, within BBR_RS12870at 638.299 kb on + strand, within BBR_RS12870at 638.299 kb on + strand, within BBR_RS12870at 638.325 kb on + strand, within BBR_RS12870at 638.330 kb on + strand, within BBR_RS12870at 638.341 kb on + strand, within BBR_RS12870at 638.349 kb on - strand, within BBR_RS12870at 638.366 kb on + strand, within BBR_RS12870at 638.374 kb on - strand, within BBR_RS12870at 638.377 kb on + strand, within BBR_RS12870at 638.377 kb on + strand, within BBR_RS12870at 638.401 kb on + strand, within BBR_RS12870at 638.404 kb on - strand, within BBR_RS12870at 638.407 kb on - strand, within BBR_RS12870at 638.425 kb on + strand, within BBR_RS12870at 638.435 kb on - strand, within BBR_RS12870at 638.451 kb on - strand, within BBR_RS12870at 638.542 kb on - strand, within BBR_RS12870at 638.557 kb on - strand, within BBR_RS12870at 638.582 kb on + strand, within BBR_RS12870at 638.703 kb on + strand, within BBR_RS12870at 638.713 kb on + strand, within BBR_RS12870at 638.713 kb on + strand, within BBR_RS12870at 638.718 kb on + strand, within BBR_RS12870at 638.718 kb on + strand, within BBR_RS12870at 638.718 kb on + strand, within BBR_RS12870at 638.718 kb on + strand, within BBR_RS12870at 638.726 kb on - strand, within BBR_RS12870at 638.726 kb on - strand, within BBR_RS12870at 638.733 kb on + strand, within BBR_RS12870at 638.770 kb on - strand, within BBR_RS12870at 638.770 kb on - strand, within BBR_RS12870at 638.831 kb on - strandat 638.843 kb on - strandat 638.845 kb on - strandat 638.845 kb on - strandat 638.855 kb on - strandat 638.855 kb on - strandat 638.860 kb on - strandat 638.884 kb on + strandat 638.886 kb on + strandat 638.894 kb on - strandat 638.894 kb on - strandat 638.896 kb on + strandat 638.896 kb on + strandat 638.904 kb on - strandat 638.913 kb on - strandat 638.928 kb on + strandat 638.928 kb on + strandat 638.928 kb on + strandat 638.928 kb on + strandat 638.928 kb on + strandat 638.928 kb on + strandat 638.936 kb on - strandat 638.936 kb on - strandat 638.936 kb on - strandat 638.938 kb on - strandat 639.062 kb on + strand, within BBR_RS12875at 639.062 kb on + strand, within BBR_RS12875at 639.062 kb on + strand, within BBR_RS12875at 639.148 kb on - strand, within BBR_RS12875at 639.222 kb on + strand, within BBR_RS12875at 639.241 kb on + strand, within BBR_RS12875at 639.253 kb on + strand, within BBR_RS12875at 639.253 kb on + strand, within BBR_RS12875at 639.266 kb on + strand, within BBR_RS12875at 639.290 kb on - strand, within BBR_RS12875at 639.302 kb on + strand, within BBR_RS12875at 639.303 kb on + strand, within BBR_RS12875at 639.312 kb on + strand, within BBR_RS12875at 639.320 kb on - strand, within BBR_RS12875at 639.320 kb on - strand, within BBR_RS12875at 639.410 kb on + strand, within BBR_RS12875at 639.454 kb on - strand, within BBR_RS12875at 639.504 kb on - strand, within BBR_RS12875at 639.533 kb on + strand, within BBR_RS12875at 639.571 kb on + strand, within BBR_RS12875at 639.571 kb on + strand, within BBR_RS12875at 639.579 kb on - strand, within BBR_RS12875at 639.579 kb on - strand, within BBR_RS12875at 639.579 kb on - strand, within BBR_RS12875at 639.581 kb on + strand, within BBR_RS12875at 639.593 kb on - strand, within BBR_RS12875at 639.606 kb on + strand, within BBR_RS12875at 639.629 kb on - strand, within BBR_RS12875at 639.630 kb on - strand, within BBR_RS12875at 639.635 kb on - strand, within BBR_RS12875at 639.651 kb on - strand, within BBR_RS12875at 639.663 kb on + strand, within BBR_RS12875at 639.671 kb on - strand, within BBR_RS12875at 639.677 kb on + strand, within BBR_RS12875at 639.677 kb on + strand, within BBR_RS12875at 639.677 kb on + strand, within BBR_RS12875at 639.678 kb on - strand, within BBR_RS12875at 639.678 kb on - strand, within BBR_RS12875at 639.685 kb on - strand, within BBR_RS12875at 639.720 kb on - strand, within BBR_RS12875at 639.722 kb on - strand, within BBR_RS12875at 639.731 kb on + strand, within BBR_RS12875at 639.756 kb on + strand, within BBR_RS12875at 639.756 kb on + strand, within BBR_RS12875at 639.756 kb on + strand, within BBR_RS12875at 639.757 kb on + strand, within BBR_RS12875at 639.773 kb on + strand, within BBR_RS12875at 639.773 kb on + strand, within BBR_RS12875at 639.779 kb on + strand, within BBR_RS12875at 639.787 kb on - strand, within BBR_RS12875at 639.804 kb on + strand, within BBR_RS12875at 639.858 kb on + strand, within BBR_RS12875at 639.882 kb on + strand, within BBR_RS12875at 639.890 kb on - strand, within BBR_RS12875at 639.892 kb on + strand, within BBR_RS12875at 639.892 kb on + strand, within BBR_RS12875at 639.894 kb on + strand, within BBR_RS12875at 639.900 kb on - strand, within BBR_RS12875at 639.943 kb on + strand, within BBR_RS12875at 639.956 kb on - strand, within BBR_RS12875at 639.975 kb on + strand, within BBR_RS12875at 640.029 kb on - strandat 640.065 kb on - strandat 640.065 kb on - strandat 640.071 kb on + strandat 640.079 kb on - strandat 640.079 kb on - strandat 640.079 kb on - strandat 640.079 kb on - strandat 640.079 kb on - strandat 640.125 kb on - strandat 640.204 kb on + strandat 640.204 kb on + strandat 640.204 kb on + strandat 640.204 kb on + strandat 640.209 kb on + strandat 640.212 kb on - strandat 640.212 kb on - strandat 640.212 kb on - strandat 640.224 kb on - strandat 640.269 kb on + strandat 640.271 kb on + strandat 640.281 kb on + strandat 640.281 kb on + strandat 640.289 kb on - strandat 640.327 kb on - strand, within BBR_RS12880at 640.379 kb on - strand, within BBR_RS12880at 640.394 kb on + strand, within BBR_RS12880at 640.398 kb on - strand, within BBR_RS12880at 640.413 kb on + strand, within BBR_RS12880at 640.421 kb on - strand, within BBR_RS12880at 640.463 kb on + strand, within BBR_RS12880at 640.483 kb on - strand, within BBR_RS12880at 640.527 kb on + strand, within BBR_RS12880at 640.563 kb on + strand, within BBR_RS12880at 640.585 kb on + strand, within BBR_RS12880at 640.622 kb on + strand, within BBR_RS12880at 640.622 kb on + strand, within BBR_RS12880at 640.635 kb on + strand, within BBR_RS12880at 640.643 kb on - strand, within BBR_RS12880at 640.673 kb on + strand, within BBR_RS12880at 640.678 kb on + strand, within BBR_RS12880at 640.686 kb on + strand, within BBR_RS12880at 640.696 kb on - strand, within BBR_RS12880at 640.710 kb on + strand, within BBR_RS12880at 640.717 kb on + strand, within BBR_RS12880at 640.718 kb on - strand, within BBR_RS12880at 640.722 kb on + strand, within BBR_RS12880at 640.747 kb on - strand, within BBR_RS12880at 640.761 kb on - strand, within BBR_RS12880at 640.787 kb on + strand, within BBR_RS12880at 640.787 kb on + strand, within BBR_RS12880at 640.808 kb on - strand, within BBR_RS12880at 640.809 kb on + strand, within BBR_RS12880at 640.828 kb on + strand, within BBR_RS12880at 640.882 kb on - strandat 640.940 kb on - strandat 640.988 kb on + strandat 640.996 kb on - strandat 641.038 kb on - strandat 641.050 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction CDM1 without Serine
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637,951 + +0.9
637,975 + BBR_RS12870 0.11 +1.1
637,981 - BBR_RS12870 0.12 +0.0
638,049 + BBR_RS12870 0.18 +0.9
638,068 + BBR_RS12870 0.20 +1.0
638,068 + BBR_RS12870 0.20 +0.9
638,073 + BBR_RS12870 0.21 +1.3
638,073 + BBR_RS12870 0.21 +1.9
638,073 + BBR_RS12870 0.21 +1.8
638,080 + BBR_RS12870 0.21 +1.3
638,081 - BBR_RS12870 0.21 -0.2
638,147 + BBR_RS12870 0.28 +2.6
638,147 + BBR_RS12870 0.28 +1.5
638,147 + BBR_RS12870 0.28 +1.3
638,147 + BBR_RS12870 0.28 +3.0
638,147 + BBR_RS12870 0.28 +2.7
638,155 - BBR_RS12870 0.28 -0.1
638,155 - BBR_RS12870 0.28 +0.4
638,155 - BBR_RS12870 0.28 +1.0
638,155 - BBR_RS12870 0.28 +0.1
638,159 + BBR_RS12870 0.29 +0.3
638,192 - BBR_RS12870 0.32 +2.1
638,199 - BBR_RS12870 0.33 +1.6
638,222 - BBR_RS12870 0.35 +0.4
638,231 + BBR_RS12870 0.36 +0.5
638,231 + BBR_RS12870 0.36 +1.3
638,239 - BBR_RS12870 0.37 +1.8
638,257 + BBR_RS12870 0.38 +2.2
638,257 + BBR_RS12870 0.38 +1.2
638,262 + BBR_RS12870 0.39 +1.6
638,262 + BBR_RS12870 0.39 +2.1
638,262 + BBR_RS12870 0.39 +0.8
638,262 + BBR_RS12870 0.39 +2.7
638,265 - BBR_RS12870 0.39 +0.5
638,265 - BBR_RS12870 0.39 +0.9
638,270 - BBR_RS12870 0.40 +0.6
638,282 - BBR_RS12870 0.41 +0.3
638,282 - BBR_RS12870 0.41 +1.4
638,287 - BBR_RS12870 0.41 +0.9
638,287 - BBR_RS12870 0.41 +1.3
638,289 + BBR_RS12870 0.41 +0.2
638,297 + BBR_RS12870 0.42 +1.3
638,299 + BBR_RS12870 0.42 +1.5
638,299 + BBR_RS12870 0.42 +2.0
638,325 + BBR_RS12870 0.45 +0.2
638,330 + BBR_RS12870 0.45 -0.2
638,341 + BBR_RS12870 0.47 +0.6
638,349 - BBR_RS12870 0.47 +0.8
638,366 + BBR_RS12870 0.49 +1.4
638,374 - BBR_RS12870 0.50 +0.4
638,377 + BBR_RS12870 0.50 +1.1
638,377 + BBR_RS12870 0.50 +1.2
638,401 + BBR_RS12870 0.52 +0.8
638,404 - BBR_RS12870 0.53 +0.8
638,407 - BBR_RS12870 0.53 +2.2
638,425 + BBR_RS12870 0.55 +2.4
638,435 - BBR_RS12870 0.56 -1.7
638,451 - BBR_RS12870 0.57 +0.3
638,542 - BBR_RS12870 0.66 +2.3
638,557 - BBR_RS12870 0.67 -0.0
638,582 + BBR_RS12870 0.70 +2.3
638,703 + BBR_RS12870 0.82 +1.0
638,713 + BBR_RS12870 0.83 +0.7
638,713 + BBR_RS12870 0.83 +1.5
638,718 + BBR_RS12870 0.83 +0.9
638,718 + BBR_RS12870 0.83 +1.9
638,718 + BBR_RS12870 0.83 +2.1
638,718 + BBR_RS12870 0.83 +1.3
638,726 - BBR_RS12870 0.84 +0.0
638,726 - BBR_RS12870 0.84 +1.1
638,733 + BBR_RS12870 0.84 +2.1
638,770 - BBR_RS12870 0.88 +1.7
638,770 - BBR_RS12870 0.88 -0.3
638,831 - +2.2
638,843 - +1.4
638,845 - -0.7
638,845 - -2.0
638,855 - +0.1
638,855 - -0.8
638,860 - +0.9
638,884 + +0.1
638,886 + +0.4
638,894 - -2.2
638,894 - -1.0
638,896 + +0.7
638,896 + +1.0
638,904 - +1.0
638,913 - +0.8
638,928 + -0.3
638,928 + +0.5
638,928 + -0.3
638,928 + -0.0
638,928 + -0.3
638,928 + -0.3
638,936 - +0.1
638,936 - +1.0
638,936 - -0.6
638,938 - -1.6
639,062 + BBR_RS12875 0.10 -0.4
639,062 + BBR_RS12875 0.10 -0.4
639,062 + BBR_RS12875 0.10 -1.2
639,148 - BBR_RS12875 0.18 -0.1
639,222 + BBR_RS12875 0.24 +0.6
639,241 + BBR_RS12875 0.26 -0.8
639,253 + BBR_RS12875 0.27 +0.6
639,253 + BBR_RS12875 0.27 -1.1
639,266 + BBR_RS12875 0.28 -0.3
639,290 - BBR_RS12875 0.30 -0.4
639,302 + BBR_RS12875 0.31 -0.5
639,303 + BBR_RS12875 0.31 +0.6
639,312 + BBR_RS12875 0.32 -0.1
639,320 - BBR_RS12875 0.32 +0.1
639,320 - BBR_RS12875 0.32 -0.3
639,410 + BBR_RS12875 0.40 +0.2
639,454 - BBR_RS12875 0.44 +0.5
639,504 - BBR_RS12875 0.48 -0.9
639,533 + BBR_RS12875 0.51 +1.1
639,571 + BBR_RS12875 0.54 +0.2
639,571 + BBR_RS12875 0.54 +0.1
639,579 - BBR_RS12875 0.55 +1.2
639,579 - BBR_RS12875 0.55 +1.1
639,579 - BBR_RS12875 0.55 -0.6
639,581 + BBR_RS12875 0.55 -4.8
639,593 - BBR_RS12875 0.56 +0.4
639,606 + BBR_RS12875 0.57 -0.6
639,629 - BBR_RS12875 0.59 -0.1
639,630 - BBR_RS12875 0.59 -1.4
639,635 - BBR_RS12875 0.59 -1.3
639,651 - BBR_RS12875 0.61 -0.3
639,663 + BBR_RS12875 0.62 +0.1
639,671 - BBR_RS12875 0.62 +0.5
639,677 + BBR_RS12875 0.63 +0.7
639,677 + BBR_RS12875 0.63 +0.2
639,677 + BBR_RS12875 0.63 +0.1
639,678 - BBR_RS12875 0.63 +1.0
639,678 - BBR_RS12875 0.63 -1.0
639,685 - BBR_RS12875 0.64 -0.2
639,720 - BBR_RS12875 0.67 -0.0
639,722 - BBR_RS12875 0.67 +0.2
639,731 + BBR_RS12875 0.68 -0.3
639,756 + BBR_RS12875 0.70 -0.1
639,756 + BBR_RS12875 0.70 +0.5
639,756 + BBR_RS12875 0.70 -0.7
639,757 + BBR_RS12875 0.70 -0.7
639,773 + BBR_RS12875 0.71 +0.2
639,773 + BBR_RS12875 0.71 -1.2
639,779 + BBR_RS12875 0.72 -0.9
639,787 - BBR_RS12875 0.72 -0.7
639,804 + BBR_RS12875 0.74 +0.2
639,858 + BBR_RS12875 0.79 -0.4
639,882 + BBR_RS12875 0.81 +0.3
639,890 - BBR_RS12875 0.81 +1.8
639,892 + BBR_RS12875 0.81 +0.7
639,892 + BBR_RS12875 0.81 +0.1
639,894 + BBR_RS12875 0.82 -0.7
639,900 - BBR_RS12875 0.82 -2.3
639,943 + BBR_RS12875 0.86 -1.7
639,956 - BBR_RS12875 0.87 -0.6
639,975 + BBR_RS12875 0.89 -0.6
640,029 - -1.2
640,065 - -0.6
640,065 - -1.7
640,071 + +0.8
640,079 - -2.2
640,079 - +0.6
640,079 - +1.9
640,079 - +1.6
640,079 - -0.1
640,125 - -0.0
640,204 + +0.2
640,204 + -0.4
640,204 + +0.3
640,204 + +0.0
640,209 + -0.2
640,212 - -0.6
640,212 - -0.8
640,212 - -2.0
640,224 - +1.2
640,269 + +1.6
640,271 + +0.9
640,281 + +1.0
640,281 + +1.2
640,289 - -1.3
640,327 - BBR_RS12880 0.15 +1.1
640,379 - BBR_RS12880 0.22 -0.4
640,394 + BBR_RS12880 0.24 +0.6
640,398 - BBR_RS12880 0.25 +0.4
640,413 + BBR_RS12880 0.27 +0.4
640,421 - BBR_RS12880 0.28 -3.2
640,463 + BBR_RS12880 0.34 +1.2
640,483 - BBR_RS12880 0.37 -0.8
640,527 + BBR_RS12880 0.43 -0.4
640,563 + BBR_RS12880 0.48 +1.2
640,585 + BBR_RS12880 0.51 +1.1
640,622 + BBR_RS12880 0.56 +1.0
640,622 + BBR_RS12880 0.56 +0.5
640,635 + BBR_RS12880 0.58 +1.0
640,643 - BBR_RS12880 0.59 +0.5
640,673 + BBR_RS12880 0.63 +1.7
640,678 + BBR_RS12880 0.64 +1.0
640,686 + BBR_RS12880 0.65 +0.5
640,696 - BBR_RS12880 0.66 -1.7
640,710 + BBR_RS12880 0.68 +1.6
640,717 + BBR_RS12880 0.69 +0.6
640,718 - BBR_RS12880 0.69 -0.1
640,722 + BBR_RS12880 0.70 +0.4
640,747 - BBR_RS12880 0.73 +0.8
640,761 - BBR_RS12880 0.75 +0.9
640,787 + BBR_RS12880 0.79 +1.6
640,787 + BBR_RS12880 0.79 +0.8
640,808 - BBR_RS12880 0.82 +2.0
640,809 + BBR_RS12880 0.82 +1.3
640,828 + BBR_RS12880 0.85 +0.4
640,882 - -0.2
640,940 - -1.3
640,988 + -0.0
640,996 - -1.1
641,038 - -0.1
641,050 - -0.4

Or see this region's nucleotide sequence