Experiment: CDM1 without Serine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BBR_RS12185 and BBR_RS12190 are separated by 289 nucleotides BBR_RS12190 and BBR_RS12195 are separated by 164 nucleotides BBR_RS12195 and BBR_RS12200 overlap by 21 nucleotides
BBR_RS12185: BBR_RS12185 - methylated-DNA--[protein]-cysteine S-methyltransferase, at 483,000 to 483,554
_RS12185
BBR_RS12190: BBR_RS12190 - holo-ACP synthase, at 483,844 to 484,293
_RS12190
BBR_RS12195: BBR_RS12195 - alpha-amylase, at 484,458 to 485,000
_RS12195
BBR_RS12200: BBR_RS12200 - hypothetical protein, at 484,980 to 485,678
_RS12200
Position (kb) 483
484
485 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 482.857 kb on + strand at 482.871 kb on - strand at 482.871 kb on - strand at 482.884 kb on - strand at 482.928 kb on + strand at 482.928 kb on + strand at 482.928 kb on + strand at 482.928 kb on + strand at 482.928 kb on + strand at 482.933 kb on + strand at 482.936 kb on - strand at 482.936 kb on - strand at 482.936 kb on - strand at 482.936 kb on - strand at 482.936 kb on - strand at 482.936 kb on - strand at 482.936 kb on - strand at 482.938 kb on - strand at 482.943 kb on - strand at 482.943 kb on - strand at 482.997 kb on + strand at 482.997 kb on + strand at 483.005 kb on - strand at 483.016 kb on - strand at 483.039 kb on + strand at 483.039 kb on + strand at 483.046 kb on - strand at 483.047 kb on + strand at 483.051 kb on + strand at 483.052 kb on + strand at 483.054 kb on - strand at 483.060 kb on - strand, within BBR_RS12185 at 483.075 kb on - strand, within BBR_RS12185 at 483.107 kb on + strand, within BBR_RS12185 at 483.112 kb on + strand, within BBR_RS12185 at 483.141 kb on - strand, within BBR_RS12185 at 483.141 kb on - strand, within BBR_RS12185 at 483.147 kb on + strand, within BBR_RS12185 at 483.164 kb on + strand, within BBR_RS12185 at 483.164 kb on - strand, within BBR_RS12185 at 483.169 kb on + strand, within BBR_RS12185 at 483.187 kb on + strand, within BBR_RS12185 at 483.216 kb on - strand, within BBR_RS12185 at 483.226 kb on - strand, within BBR_RS12185 at 483.233 kb on + strand, within BBR_RS12185 at 483.233 kb on + strand, within BBR_RS12185 at 483.233 kb on + strand, within BBR_RS12185 at 483.233 kb on + strand, within BBR_RS12185 at 483.245 kb on + strand, within BBR_RS12185 at 483.293 kb on + strand, within BBR_RS12185 at 483.329 kb on + strand, within BBR_RS12185 at 483.335 kb on + strand, within BBR_RS12185 at 483.336 kb on + strand, within BBR_RS12185 at 483.343 kb on - strand, within BBR_RS12185 at 483.355 kb on + strand, within BBR_RS12185 at 483.363 kb on - strand, within BBR_RS12185 at 483.368 kb on - strand, within BBR_RS12185 at 483.370 kb on - strand, within BBR_RS12185 at 483.380 kb on - strand, within BBR_RS12185 at 483.384 kb on + strand, within BBR_RS12185 at 483.386 kb on + strand, within BBR_RS12185 at 483.398 kb on + strand, within BBR_RS12185 at 483.409 kb on + strand, within BBR_RS12185 at 483.425 kb on - strand, within BBR_RS12185 at 483.450 kb on - strand, within BBR_RS12185 at 483.460 kb on + strand, within BBR_RS12185 at 483.463 kb on - strand, within BBR_RS12185 at 483.463 kb on - strand, within BBR_RS12185 at 483.485 kb on - strand, within BBR_RS12185 at 483.486 kb on + strand, within BBR_RS12185 at 483.500 kb on + strand at 483.551 kb on - strand at 483.621 kb on + strand at 483.639 kb on + strand at 483.639 kb on + strand at 483.647 kb on - strand at 483.654 kb on - strand at 483.687 kb on + strand at 483.687 kb on + strand at 483.687 kb on + strand at 483.687 kb on + strand at 483.687 kb on + strand at 483.695 kb on - strand at 483.718 kb on - strand at 483.758 kb on + strand at 483.763 kb on + strand at 483.805 kb on + strand at 483.813 kb on - strand at 483.825 kb on + strand at 483.833 kb on - strand at 484.324 kb on + strand at 484.334 kb on - strand at 484.353 kb on + strand at 484.395 kb on + strand at 484.396 kb on + strand at 484.403 kb on - strand at 484.420 kb on + strand at 484.453 kb on + strand at 484.459 kb on - strand at 484.466 kb on + strand at 484.492 kb on - strand at 484.511 kb on + strand at 484.511 kb on + strand at 484.518 kb on + strand, within BBR_RS12195 at 484.518 kb on + strand, within BBR_RS12195 at 484.518 kb on + strand, within BBR_RS12195 at 484.544 kb on + strand, within BBR_RS12195 at 484.550 kb on - strand, within BBR_RS12195 at 484.551 kb on + strand, within BBR_RS12195 at 484.552 kb on - strand, within BBR_RS12195 at 484.552 kb on - strand, within BBR_RS12195 at 484.552 kb on - strand, within BBR_RS12195 at 484.554 kb on - strand, within BBR_RS12195 at 484.599 kb on + strand, within BBR_RS12195 at 484.599 kb on + strand, within BBR_RS12195 at 484.599 kb on + strand, within BBR_RS12195 at 484.599 kb on + strand, within BBR_RS12195 at 484.599 kb on + strand, within BBR_RS12195 at 484.599 kb on + strand, within BBR_RS12195 at 484.604 kb on + strand, within BBR_RS12195 at 484.604 kb on + strand, within BBR_RS12195 at 484.604 kb on + strand, within BBR_RS12195 at 484.604 kb on + strand, within BBR_RS12195 at 484.604 kb on + strand, within BBR_RS12195 at 484.604 kb on + strand, within BBR_RS12195 at 484.607 kb on - strand, within BBR_RS12195 at 484.607 kb on - strand, within BBR_RS12195 at 484.607 kb on - strand, within BBR_RS12195 at 484.607 kb on - strand, within BBR_RS12195 at 484.607 kb on - strand, within BBR_RS12195 at 484.607 kb on - strand, within BBR_RS12195 at 484.612 kb on - strand, within BBR_RS12195 at 484.612 kb on - strand, within BBR_RS12195 at 484.612 kb on - strand, within BBR_RS12195 at 484.612 kb on - strand, within BBR_RS12195 at 484.612 kb on - strand, within BBR_RS12195 at 484.635 kb on - strand, within BBR_RS12195 at 484.700 kb on + strand, within BBR_RS12195 at 484.713 kb on - strand, within BBR_RS12195 at 484.764 kb on + strand, within BBR_RS12195 at 484.779 kb on - strand, within BBR_RS12195 at 484.780 kb on + strand, within BBR_RS12195 at 484.781 kb on + strand, within BBR_RS12195 at 484.783 kb on - strand, within BBR_RS12195 at 484.785 kb on - strand, within BBR_RS12195 at 484.839 kb on + strand, within BBR_RS12195 at 484.839 kb on + strand, within BBR_RS12195 at 484.839 kb on + strand, within BBR_RS12195 at 484.847 kb on - strand, within BBR_RS12195 at 484.847 kb on - strand, within BBR_RS12195 at 484.847 kb on - strand, within BBR_RS12195 at 484.847 kb on - strand, within BBR_RS12195 at 484.847 kb on - strand, within BBR_RS12195 at 484.847 kb on - strand, within BBR_RS12195 at 484.847 kb on - strand, within BBR_RS12195 at 484.849 kb on - strand, within BBR_RS12195 at 484.855 kb on + strand, within BBR_RS12195 at 484.863 kb on - strand, within BBR_RS12195 at 484.884 kb on - strand, within BBR_RS12195 at 484.908 kb on - strand, within BBR_RS12195 at 484.921 kb on + strand, within BBR_RS12195 at 484.921 kb on + strand, within BBR_RS12195 at 484.929 kb on - strand, within BBR_RS12195 at 484.946 kb on - strand at 484.963 kb on + strand at 484.977 kb on + strand at 484.977 kb on + strand at 484.986 kb on - strand at 484.986 kb on - strand at 484.986 kb on - strand at 484.990 kb on + strand at 485.004 kb on + strand at 485.004 kb on + strand at 485.074 kb on + strand, within BBR_RS12200 at 485.093 kb on + strand, within BBR_RS12200 at 485.097 kb on + strand, within BBR_RS12200 at 485.110 kb on + strand, within BBR_RS12200 at 485.110 kb on + strand, within BBR_RS12200 at 485.115 kb on + strand, within BBR_RS12200 at 485.118 kb on - strand, within BBR_RS12200 at 485.118 kb on - strand, within BBR_RS12200 at 485.123 kb on - strand, within BBR_RS12200 at 485.123 kb on - strand, within BBR_RS12200 at 485.123 kb on - strand, within BBR_RS12200 at 485.128 kb on + strand, within BBR_RS12200 at 485.148 kb on - strand, within BBR_RS12200 at 485.185 kb on + strand, within BBR_RS12200 at 485.185 kb on + strand, within BBR_RS12200 at 485.185 kb on + strand, within BBR_RS12200 at 485.185 kb on + strand, within BBR_RS12200 at 485.187 kb on - strand, within BBR_RS12200 at 485.193 kb on - strand, within BBR_RS12200 at 485.200 kb on - strand, within BBR_RS12200 at 485.200 kb on - strand, within BBR_RS12200 at 485.206 kb on + strand, within BBR_RS12200 at 485.214 kb on - strand, within BBR_RS12200 at 485.219 kb on + strand, within BBR_RS12200 at 485.281 kb on + strand, within BBR_RS12200 at 485.281 kb on + strand, within BBR_RS12200 at 485.289 kb on - strand, within BBR_RS12200 at 485.289 kb on - strand, within BBR_RS12200 at 485.289 kb on - strand, within BBR_RS12200 at 485.291 kb on + strand, within BBR_RS12200 at 485.291 kb on + strand, within BBR_RS12200
Per-strain Table
Position Strand Gene LocusTag Fraction CDM1 without Serine remove 482,857 + -0.1 482,871 - -0.6 482,871 - -0.3 482,884 - -1.6 482,928 + +0.4 482,928 + -0.8 482,928 + +1.0 482,928 + +1.2 482,928 + +0.5 482,933 + +1.3 482,936 - -0.7 482,936 - -2.0 482,936 - +0.6 482,936 - -2.1 482,936 - -0.3 482,936 - -0.9 482,936 - -1.4 482,938 - -0.9 482,943 - -1.3 482,943 - -2.0 482,997 + -0.5 482,997 + -0.2 483,005 - -0.8 483,016 - -2.0 483,039 + +1.0 483,039 + +0.8 483,046 - -0.5 483,047 + -0.9 483,051 + -0.7 483,052 + -0.6 483,054 - -1.8 483,060 - BBR_RS12185 0.11 -0.1 483,075 - BBR_RS12185 0.14 -1.4 483,107 + BBR_RS12185 0.19 -1.5 483,112 + BBR_RS12185 0.20 -1.3 483,141 - BBR_RS12185 0.25 -1.5 483,141 - BBR_RS12185 0.25 -0.5 483,147 + BBR_RS12185 0.26 -1.6 483,164 + BBR_RS12185 0.30 +1.6 483,164 - BBR_RS12185 0.30 -0.5 483,169 + BBR_RS12185 0.30 -0.2 483,187 + BBR_RS12185 0.34 -0.2 483,216 - BBR_RS12185 0.39 -2.0 483,226 - BBR_RS12185 0.41 +1.1 483,233 + BBR_RS12185 0.42 +0.2 483,233 + BBR_RS12185 0.42 +0.7 483,233 + BBR_RS12185 0.42 +0.9 483,233 + BBR_RS12185 0.42 +0.3 483,245 + BBR_RS12185 0.44 +0.8 483,293 + BBR_RS12185 0.53 -1.5 483,329 + BBR_RS12185 0.59 +0.2 483,335 + BBR_RS12185 0.60 -0.5 483,336 + BBR_RS12185 0.61 -0.8 483,343 - BBR_RS12185 0.62 -0.3 483,355 + BBR_RS12185 0.64 +0.4 483,363 - BBR_RS12185 0.65 -1.1 483,368 - BBR_RS12185 0.66 -1.0 483,370 - BBR_RS12185 0.67 -0.8 483,380 - BBR_RS12185 0.68 +0.1 483,384 + BBR_RS12185 0.69 +1.4 483,386 + BBR_RS12185 0.70 +0.5 483,398 + BBR_RS12185 0.72 -0.6 483,409 + BBR_RS12185 0.74 +0.2 483,425 - BBR_RS12185 0.77 -0.6 483,450 - BBR_RS12185 0.81 -0.8 483,460 + BBR_RS12185 0.83 +0.4 483,463 - BBR_RS12185 0.83 +0.3 483,463 - BBR_RS12185 0.83 +1.0 483,485 - BBR_RS12185 0.87 -0.4 483,486 + BBR_RS12185 0.88 -0.4 483,500 + -0.7 483,551 - -1.8 483,621 + +0.2 483,639 + +0.5 483,639 + -0.1 483,647 - -0.5 483,654 - -0.0 483,687 + -1.4 483,687 + -1.0 483,687 + -2.0 483,687 + +0.3 483,687 + -0.7 483,695 - -0.4 483,718 - -2.5 483,758 + -0.0 483,763 + -0.9 483,805 + -0.2 483,813 - -0.0 483,825 + -0.4 483,833 - -1.5 484,324 + -2.0 484,334 - +0.8 484,353 + -1.9 484,395 + +0.7 484,396 + -1.6 484,403 - -0.8 484,420 + -2.0 484,453 + -1.9 484,459 - +0.5 484,466 + -2.0 484,492 - -0.2 484,511 + -2.0 484,511 + -0.0 484,518 + BBR_RS12195 0.11 -0.8 484,518 + BBR_RS12195 0.11 -1.0 484,518 + BBR_RS12195 0.11 -1.5 484,544 + BBR_RS12195 0.16 -0.5 484,550 - BBR_RS12195 0.17 -1.7 484,551 + BBR_RS12195 0.17 -0.8 484,552 - BBR_RS12195 0.17 -0.5 484,552 - BBR_RS12195 0.17 -2.7 484,552 - BBR_RS12195 0.17 +0.4 484,554 - BBR_RS12195 0.18 -0.5 484,599 + BBR_RS12195 0.26 -0.1 484,599 + BBR_RS12195 0.26 +0.2 484,599 + BBR_RS12195 0.26 +0.5 484,599 + BBR_RS12195 0.26 -0.6 484,599 + BBR_RS12195 0.26 -0.0 484,599 + BBR_RS12195 0.26 -1.6 484,604 + BBR_RS12195 0.27 -1.6 484,604 + BBR_RS12195 0.27 -2.1 484,604 + BBR_RS12195 0.27 -1.0 484,604 + BBR_RS12195 0.27 -1.8 484,604 + BBR_RS12195 0.27 -0.8 484,604 + BBR_RS12195 0.27 -1.1 484,607 - BBR_RS12195 0.27 -0.2 484,607 - BBR_RS12195 0.27 +0.6 484,607 - BBR_RS12195 0.27 -1.3 484,607 - BBR_RS12195 0.27 -0.3 484,607 - BBR_RS12195 0.27 -1.1 484,607 - BBR_RS12195 0.27 +0.5 484,612 - BBR_RS12195 0.28 -2.6 484,612 - BBR_RS12195 0.28 -1.1 484,612 - BBR_RS12195 0.28 -0.8 484,612 - BBR_RS12195 0.28 -0.8 484,612 - BBR_RS12195 0.28 +0.1 484,635 - BBR_RS12195 0.33 +1.0 484,700 + BBR_RS12195 0.45 -0.6 484,713 - BBR_RS12195 0.47 -0.0 484,764 + BBR_RS12195 0.56 +1.2 484,779 - BBR_RS12195 0.59 -1.3 484,780 + BBR_RS12195 0.59 -2.3 484,781 + BBR_RS12195 0.59 -0.9 484,783 - BBR_RS12195 0.60 -0.3 484,785 - BBR_RS12195 0.60 -0.2 484,839 + BBR_RS12195 0.70 -1.5 484,839 + BBR_RS12195 0.70 -0.2 484,839 + BBR_RS12195 0.70 -2.7 484,847 - BBR_RS12195 0.72 +0.3 484,847 - BBR_RS12195 0.72 -0.7 484,847 - BBR_RS12195 0.72 +0.6 484,847 - BBR_RS12195 0.72 -0.5 484,847 - BBR_RS12195 0.72 -0.2 484,847 - BBR_RS12195 0.72 +0.2 484,847 - BBR_RS12195 0.72 -0.7 484,849 - BBR_RS12195 0.72 -0.4 484,855 + BBR_RS12195 0.73 -1.3 484,863 - BBR_RS12195 0.75 -1.9 484,884 - BBR_RS12195 0.78 -2.0 484,908 - BBR_RS12195 0.83 -0.5 484,921 + BBR_RS12195 0.85 -1.5 484,921 + BBR_RS12195 0.85 -0.2 484,929 - BBR_RS12195 0.87 +0.3 484,946 - -0.8 484,963 + -0.8 484,977 + +0.9 484,977 + +0.5 484,986 - -1.9 484,986 - +1.0 484,986 - -1.5 484,990 + -0.3 485,004 + -1.1 485,004 + +0.5 485,074 + BBR_RS12200 0.13 +0.4 485,093 + BBR_RS12200 0.16 -0.4 485,097 + BBR_RS12200 0.17 -2.0 485,110 + BBR_RS12200 0.19 +1.0 485,110 + BBR_RS12200 0.19 +0.7 485,115 + BBR_RS12200 0.19 -0.8 485,118 - BBR_RS12200 0.20 -0.3 485,118 - BBR_RS12200 0.20 +0.7 485,123 - BBR_RS12200 0.20 +1.4 485,123 - BBR_RS12200 0.20 -3.3 485,123 - BBR_RS12200 0.20 +0.9 485,128 + BBR_RS12200 0.21 -1.3 485,148 - BBR_RS12200 0.24 -0.0 485,185 + BBR_RS12200 0.29 +0.9 485,185 + BBR_RS12200 0.29 -0.8 485,185 + BBR_RS12200 0.29 +0.1 485,185 + BBR_RS12200 0.29 +0.3 485,187 - BBR_RS12200 0.30 -2.0 485,193 - BBR_RS12200 0.30 -0.3 485,200 - BBR_RS12200 0.31 -0.0 485,200 - BBR_RS12200 0.31 +0.9 485,206 + BBR_RS12200 0.32 -0.8 485,214 - BBR_RS12200 0.33 -2.1 485,219 + BBR_RS12200 0.34 -2.2 485,281 + BBR_RS12200 0.43 -1.4 485,281 + BBR_RS12200 0.43 -0.6 485,289 - BBR_RS12200 0.44 -0.8 485,289 - BBR_RS12200 0.44 +0.7 485,289 - BBR_RS12200 0.44 -0.3 485,291 + BBR_RS12200 0.44 -0.6 485,291 + BBR_RS12200 0.44 -2.5
Or see this region's nucleotide sequence