Experiment: CDM1 without Serine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BBR_RS12120 and BBR_RS12125 are separated by 131 nucleotides BBR_RS12125 and BBR_RS12130 are separated by 427 nucleotides BBR_RS12130 and BBR_RS12135 are separated by 78 nucleotides
BBR_RS12120: BBR_RS12120 - aspartate ammonia-lyase, at 467,808 to 469,241
_RS12120
BBR_RS12125: BBR_RS12125 - transposase, at 469,373 to 469,531
_RS12125
BBR_RS12130: BBR_RS12130 - sulfite exporter TauE/SafE family protein, at 469,959 to 470,762
_RS12130
BBR_RS12135: BBR_RS12135 - anaerobic sulfatase maturase, at 470,841 to 472,133
_RS12135
Position (kb) 469
470
471 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 468.960 kb on - strand, within BBR_RS12120 at 468.995 kb on + strand, within BBR_RS12120 at 469.000 kb on - strand, within BBR_RS12120 at 469.009 kb on + strand, within BBR_RS12120 at 469.009 kb on + strand, within BBR_RS12120 at 469.023 kb on - strand, within BBR_RS12120 at 469.065 kb on - strand, within BBR_RS12120 at 469.065 kb on - strand, within BBR_RS12120 at 469.070 kb on + strand, within BBR_RS12120 at 469.078 kb on - strand, within BBR_RS12120 at 469.117 kb on + strand at 469.135 kb on - strand at 469.159 kb on - strand at 469.206 kb on - strand at 469.243 kb on + strand at 469.249 kb on + strand at 469.249 kb on + strand at 469.273 kb on + strand at 469.275 kb on + strand at 469.275 kb on + strand at 469.278 kb on + strand at 469.318 kb on + strand at 469.318 kb on + strand at 469.326 kb on - strand at 469.339 kb on - strand at 469.339 kb on - strand at 469.344 kb on - strand at 469.365 kb on + strand at 469.370 kb on + strand at 469.370 kb on + strand at 469.370 kb on + strand at 469.370 kb on + strand at 469.370 kb on + strand at 469.370 kb on + strand at 469.370 kb on + strand at 469.370 kb on + strand at 469.370 kb on + strand at 469.378 kb on - strand at 469.382 kb on + strand at 469.382 kb on + strand at 469.389 kb on - strand, within BBR_RS12125 at 469.390 kb on - strand, within BBR_RS12125 at 469.391 kb on + strand, within BBR_RS12125 at 469.391 kb on + strand, within BBR_RS12125 at 469.396 kb on + strand, within BBR_RS12125 at 469.425 kb on - strand, within BBR_RS12125 at 469.440 kb on - strand, within BBR_RS12125 at 469.445 kb on - strand, within BBR_RS12125 at 469.458 kb on + strand, within BBR_RS12125 at 469.458 kb on + strand, within BBR_RS12125 at 469.462 kb on + strand, within BBR_RS12125 at 469.462 kb on + strand, within BBR_RS12125 at 469.466 kb on - strand, within BBR_RS12125 at 469.481 kb on + strand, within BBR_RS12125 at 469.481 kb on + strand, within BBR_RS12125 at 469.488 kb on + strand, within BBR_RS12125 at 469.488 kb on + strand, within BBR_RS12125 at 469.489 kb on - strand, within BBR_RS12125 at 469.519 kb on - strand at 469.520 kb on + strand at 469.527 kb on + strand at 469.532 kb on + strand at 469.532 kb on + strand at 469.540 kb on - strand at 469.550 kb on - strand at 469.550 kb on - strand at 469.551 kb on - strand at 469.605 kb on + strand at 469.613 kb on - strand at 469.688 kb on + strand at 469.688 kb on + strand at 469.688 kb on + strand at 469.695 kb on + strand at 469.696 kb on - strand at 469.696 kb on - strand at 469.707 kb on + strand at 469.709 kb on + strand at 469.709 kb on + strand at 469.717 kb on - strand at 469.717 kb on - strand at 469.722 kb on - strand at 469.741 kb on + strand at 469.747 kb on + strand at 469.753 kb on - strand at 469.755 kb on + strand at 469.763 kb on - strand at 469.829 kb on - strand at 469.841 kb on - strand at 469.852 kb on + strand at 469.854 kb on + strand at 469.854 kb on + strand at 469.862 kb on - strand at 469.871 kb on + strand at 469.903 kb on - strand at 469.913 kb on + strand at 469.913 kb on + strand at 469.945 kb on + strand at 469.946 kb on - strand at 469.951 kb on - strand at 469.979 kb on + strand at 469.981 kb on + strand at 470.013 kb on + strand at 470.013 kb on + strand at 470.013 kb on + strand at 470.013 kb on + strand at 470.056 kb on - strand, within BBR_RS12130 at 470.071 kb on + strand, within BBR_RS12130 at 470.071 kb on + strand, within BBR_RS12130 at 470.079 kb on - strand, within BBR_RS12130 at 470.084 kb on - strand, within BBR_RS12130 at 470.089 kb on - strand, within BBR_RS12130 at 470.091 kb on + strand, within BBR_RS12130 at 470.091 kb on - strand, within BBR_RS12130 at 470.150 kb on - strand, within BBR_RS12130 at 470.156 kb on + strand, within BBR_RS12130 at 470.159 kb on - strand, within BBR_RS12130 at 470.200 kb on + strand, within BBR_RS12130 at 470.263 kb on + strand, within BBR_RS12130 at 470.290 kb on - strand, within BBR_RS12130 at 470.301 kb on - strand, within BBR_RS12130 at 470.341 kb on + strand, within BBR_RS12130 at 470.342 kb on - strand, within BBR_RS12130 at 470.342 kb on - strand, within BBR_RS12130 at 470.374 kb on + strand, within BBR_RS12130 at 470.374 kb on + strand, within BBR_RS12130 at 470.382 kb on - strand, within BBR_RS12130 at 470.406 kb on + strand, within BBR_RS12130 at 470.417 kb on + strand, within BBR_RS12130 at 470.424 kb on - strand, within BBR_RS12130 at 470.425 kb on - strand, within BBR_RS12130 at 470.425 kb on - strand, within BBR_RS12130 at 470.441 kb on + strand, within BBR_RS12130 at 470.441 kb on + strand, within BBR_RS12130 at 470.446 kb on + strand, within BBR_RS12130 at 470.451 kb on + strand, within BBR_RS12130 at 470.454 kb on - strand, within BBR_RS12130 at 470.459 kb on - strand, within BBR_RS12130 at 470.463 kb on - strand, within BBR_RS12130 at 470.463 kb on - strand, within BBR_RS12130 at 470.468 kb on - strand, within BBR_RS12130 at 470.481 kb on + strand, within BBR_RS12130 at 470.488 kb on - strand, within BBR_RS12130 at 470.488 kb on - strand, within BBR_RS12130 at 470.498 kb on + strand, within BBR_RS12130 at 470.507 kb on - strand, within BBR_RS12130 at 470.523 kb on - strand, within BBR_RS12130 at 470.564 kb on - strand, within BBR_RS12130 at 470.623 kb on - strand, within BBR_RS12130 at 470.623 kb on - strand, within BBR_RS12130 at 470.648 kb on + strand, within BBR_RS12130 at 470.651 kb on - strand, within BBR_RS12130 at 470.655 kb on - strand, within BBR_RS12130 at 470.656 kb on + strand, within BBR_RS12130 at 470.669 kb on - strand, within BBR_RS12130 at 470.669 kb on - strand, within BBR_RS12130 at 470.669 kb on - strand, within BBR_RS12130 at 470.686 kb on - strand at 470.781 kb on + strand at 470.789 kb on - strand at 470.791 kb on - strand at 470.798 kb on + strand at 470.811 kb on - strand at 470.847 kb on - strand at 470.847 kb on - strand at 470.862 kb on + strand at 470.869 kb on - strand at 470.909 kb on + strand at 470.917 kb on - strand at 470.923 kb on + strand at 470.928 kb on + strand at 470.928 kb on + strand at 470.936 kb on - strand at 470.943 kb on - strand at 470.943 kb on - strand at 470.943 kb on - strand at 470.965 kb on - strand at 470.969 kb on + strand at 470.972 kb on - strand, within BBR_RS12135 at 470.972 kb on - strand, within BBR_RS12135 at 470.975 kb on + strand, within BBR_RS12135 at 470.994 kb on - strand, within BBR_RS12135 at 471.018 kb on - strand, within BBR_RS12135 at 471.032 kb on + strand, within BBR_RS12135 at 471.040 kb on - strand, within BBR_RS12135 at 471.046 kb on + strand, within BBR_RS12135 at 471.054 kb on - strand, within BBR_RS12135 at 471.062 kb on + strand, within BBR_RS12135 at 471.152 kb on - strand, within BBR_RS12135 at 471.152 kb on - strand, within BBR_RS12135 at 471.175 kb on - strand, within BBR_RS12135 at 471.207 kb on + strand, within BBR_RS12135 at 471.215 kb on - strand, within BBR_RS12135 at 471.261 kb on + strand, within BBR_RS12135 at 471.269 kb on - strand, within BBR_RS12135 at 471.276 kb on + strand, within BBR_RS12135 at 471.288 kb on - strand, within BBR_RS12135 at 471.307 kb on + strand, within BBR_RS12135 at 471.312 kb on + strand, within BBR_RS12135 at 471.314 kb on - strand, within BBR_RS12135 at 471.401 kb on + strand, within BBR_RS12135 at 471.401 kb on + strand, within BBR_RS12135 at 471.403 kb on - strand, within BBR_RS12135 at 471.406 kb on + strand, within BBR_RS12135 at 471.435 kb on + strand, within BBR_RS12135 at 471.472 kb on + strand, within BBR_RS12135 at 471.508 kb on + strand, within BBR_RS12135 at 471.508 kb on + strand, within BBR_RS12135 at 471.547 kb on - strand, within BBR_RS12135 at 471.576 kb on + strand, within BBR_RS12135 at 471.581 kb on + strand, within BBR_RS12135 at 471.581 kb on + strand, within BBR_RS12135 at 471.589 kb on - strand, within BBR_RS12135 at 471.589 kb on - strand, within BBR_RS12135 at 471.589 kb on - strand, within BBR_RS12135 at 471.589 kb on - strand, within BBR_RS12135 at 471.589 kb on - strand, within BBR_RS12135 at 471.589 kb on - strand, within BBR_RS12135 at 471.616 kb on + strand, within BBR_RS12135 at 471.623 kb on + strand, within BBR_RS12135 at 471.623 kb on + strand, within BBR_RS12135 at 471.624 kb on - strand, within BBR_RS12135 at 471.624 kb on - strand, within BBR_RS12135 at 471.631 kb on - strand, within BBR_RS12135 at 471.631 kb on - strand, within BBR_RS12135 at 471.631 kb on - strand, within BBR_RS12135 at 471.631 kb on - strand, within BBR_RS12135 at 471.631 kb on - strand, within BBR_RS12135 at 471.631 kb on - strand, within BBR_RS12135 at 471.646 kb on - strand, within BBR_RS12135 at 471.673 kb on + strand, within BBR_RS12135 at 471.673 kb on + strand, within BBR_RS12135 at 471.679 kb on - strand, within BBR_RS12135 at 471.681 kb on - strand, within BBR_RS12135 at 471.687 kb on + strand, within BBR_RS12135 at 471.687 kb on + strand, within BBR_RS12135 at 471.716 kb on + strand, within BBR_RS12135 at 471.722 kb on - strand, within BBR_RS12135 at 471.729 kb on - strand, within BBR_RS12135 at 471.736 kb on - strand, within BBR_RS12135
Per-strain Table
Position Strand Gene LocusTag Fraction CDM1 without Serine remove 468,960 - BBR_RS12120 0.80 -1.7 468,995 + BBR_RS12120 0.83 -0.4 469,000 - BBR_RS12120 0.83 -0.4 469,009 + BBR_RS12120 0.84 -0.7 469,009 + BBR_RS12120 0.84 -1.3 469,023 - BBR_RS12120 0.85 -0.1 469,065 - BBR_RS12120 0.88 -0.2 469,065 - BBR_RS12120 0.88 -1.4 469,070 + BBR_RS12120 0.88 +1.2 469,078 - BBR_RS12120 0.89 +0.6 469,117 + +0.8 469,135 - +1.0 469,159 - +0.5 469,206 - -2.2 469,243 + +0.3 469,249 + +0.2 469,249 + +1.3 469,273 + +0.7 469,275 + +0.2 469,275 + -1.2 469,278 + +1.1 469,318 + +0.9 469,318 + +0.7 469,326 - +0.7 469,339 - +0.7 469,339 - -0.5 469,344 - +0.5 469,365 + +0.5 469,370 + -0.8 469,370 + +0.7 469,370 + +0.5 469,370 + -0.4 469,370 + +0.0 469,370 + +0.0 469,370 + +0.1 469,370 + +1.5 469,370 + +1.2 469,378 - +0.1 469,382 + -1.1 469,382 + -2.0 469,389 - BBR_RS12125 0.10 +1.3 469,390 - BBR_RS12125 0.11 +0.3 469,391 + BBR_RS12125 0.11 +1.1 469,391 + BBR_RS12125 0.11 +0.6 469,396 + BBR_RS12125 0.14 -1.6 469,425 - BBR_RS12125 0.33 +0.7 469,440 - BBR_RS12125 0.42 +1.0 469,445 - BBR_RS12125 0.45 +1.8 469,458 + BBR_RS12125 0.53 +0.1 469,458 + BBR_RS12125 0.53 +0.7 469,462 + BBR_RS12125 0.56 +2.6 469,462 + BBR_RS12125 0.56 +0.4 469,466 - BBR_RS12125 0.58 +0.0 469,481 + BBR_RS12125 0.68 +1.0 469,481 + BBR_RS12125 0.68 +0.7 469,488 + BBR_RS12125 0.72 +0.3 469,488 + BBR_RS12125 0.72 +0.6 469,489 - BBR_RS12125 0.73 +1.3 469,519 - -0.6 469,520 + +0.0 469,527 + +2.4 469,532 + +0.1 469,532 + -0.3 469,540 - -0.0 469,550 - +0.7 469,550 - +1.2 469,551 - +0.8 469,605 + +1.6 469,613 - +0.7 469,688 + -0.4 469,688 + -2.4 469,688 + -0.9 469,695 + +1.2 469,696 - +1.0 469,696 - +0.7 469,707 + -0.5 469,709 + -0.0 469,709 + -0.2 469,717 - +1.2 469,717 - +0.6 469,722 - +1.9 469,741 + +0.5 469,747 + +0.2 469,753 - +1.1 469,755 + +1.2 469,763 - +0.1 469,829 - +0.3 469,841 - +0.5 469,852 + +0.1 469,854 + +0.7 469,854 + +1.6 469,862 - +1.6 469,871 + -1.2 469,903 - +1.1 469,913 + -1.4 469,913 + +0.8 469,945 + -2.9 469,946 - +1.6 469,951 - +0.5 469,979 + +0.3 469,981 + +0.6 470,013 + -0.1 470,013 + -1.4 470,013 + -0.2 470,013 + +0.1 470,056 - BBR_RS12130 0.12 +0.5 470,071 + BBR_RS12130 0.14 -1.1 470,071 + BBR_RS12130 0.14 +0.6 470,079 - BBR_RS12130 0.15 +0.5 470,084 - BBR_RS12130 0.16 +1.0 470,089 - BBR_RS12130 0.16 +0.5 470,091 + BBR_RS12130 0.16 -0.2 470,091 - BBR_RS12130 0.16 +0.4 470,150 - BBR_RS12130 0.24 +1.6 470,156 + BBR_RS12130 0.25 +0.5 470,159 - BBR_RS12130 0.25 +0.8 470,200 + BBR_RS12130 0.30 +0.3 470,263 + BBR_RS12130 0.38 +0.4 470,290 - BBR_RS12130 0.41 +0.8 470,301 - BBR_RS12130 0.43 +0.4 470,341 + BBR_RS12130 0.48 +0.5 470,342 - BBR_RS12130 0.48 +1.6 470,342 - BBR_RS12130 0.48 +1.0 470,374 + BBR_RS12130 0.52 +0.1 470,374 + BBR_RS12130 0.52 +1.6 470,382 - BBR_RS12130 0.53 +1.0 470,406 + BBR_RS12130 0.56 -0.0 470,417 + BBR_RS12130 0.57 +0.1 470,424 - BBR_RS12130 0.58 -1.4 470,425 - BBR_RS12130 0.58 +1.6 470,425 - BBR_RS12130 0.58 -0.5 470,441 + BBR_RS12130 0.60 +0.3 470,441 + BBR_RS12130 0.60 +0.1 470,446 + BBR_RS12130 0.61 -0.3 470,451 + BBR_RS12130 0.61 +0.5 470,454 - BBR_RS12130 0.62 +1.2 470,459 - BBR_RS12130 0.62 +0.9 470,463 - BBR_RS12130 0.63 +1.1 470,463 - BBR_RS12130 0.63 -1.8 470,468 - BBR_RS12130 0.63 -1.7 470,481 + BBR_RS12130 0.65 +0.7 470,488 - BBR_RS12130 0.66 +1.0 470,488 - BBR_RS12130 0.66 +0.6 470,498 + BBR_RS12130 0.67 +0.5 470,507 - BBR_RS12130 0.68 -0.1 470,523 - BBR_RS12130 0.70 +0.6 470,564 - BBR_RS12130 0.75 +1.7 470,623 - BBR_RS12130 0.83 -0.5 470,623 - BBR_RS12130 0.83 +0.1 470,648 + BBR_RS12130 0.86 +0.4 470,651 - BBR_RS12130 0.86 +0.1 470,655 - BBR_RS12130 0.87 +0.5 470,656 + BBR_RS12130 0.87 +0.8 470,669 - BBR_RS12130 0.88 -0.9 470,669 - BBR_RS12130 0.88 +0.3 470,669 - BBR_RS12130 0.88 +1.4 470,686 - +0.5 470,781 + +0.3 470,789 - +0.3 470,791 - +1.2 470,798 + +0.8 470,811 - -3.7 470,847 - -0.2 470,847 - +0.5 470,862 + -0.5 470,869 - -0.3 470,909 + -0.7 470,917 - +0.8 470,923 + +0.5 470,928 + +0.7 470,928 + -1.4 470,936 - +0.3 470,943 - +0.6 470,943 - -0.0 470,943 - +0.1 470,965 - +0.6 470,969 + +1.2 470,972 - BBR_RS12135 0.10 -0.0 470,972 - BBR_RS12135 0.10 -0.0 470,975 + BBR_RS12135 0.10 -1.5 470,994 - BBR_RS12135 0.12 -0.3 471,018 - BBR_RS12135 0.14 +0.0 471,032 + BBR_RS12135 0.15 +1.4 471,040 - BBR_RS12135 0.15 +0.5 471,046 + BBR_RS12135 0.16 +0.3 471,054 - BBR_RS12135 0.16 +0.6 471,062 + BBR_RS12135 0.17 -0.9 471,152 - BBR_RS12135 0.24 +0.9 471,152 - BBR_RS12135 0.24 +0.3 471,175 - BBR_RS12135 0.26 -1.1 471,207 + BBR_RS12135 0.28 -0.3 471,215 - BBR_RS12135 0.29 +0.4 471,261 + BBR_RS12135 0.32 -1.1 471,269 - BBR_RS12135 0.33 -3.2 471,276 + BBR_RS12135 0.34 -0.8 471,288 - BBR_RS12135 0.35 -0.6 471,307 + BBR_RS12135 0.36 -1.5 471,312 + BBR_RS12135 0.36 -0.3 471,314 - BBR_RS12135 0.37 -1.1 471,401 + BBR_RS12135 0.43 +0.3 471,401 + BBR_RS12135 0.43 -0.4 471,403 - BBR_RS12135 0.43 +0.1 471,406 + BBR_RS12135 0.44 -0.3 471,435 + BBR_RS12135 0.46 -0.4 471,472 + BBR_RS12135 0.49 -0.7 471,508 + BBR_RS12135 0.52 -2.3 471,508 + BBR_RS12135 0.52 +0.2 471,547 - BBR_RS12135 0.55 +1.7 471,576 + BBR_RS12135 0.57 -0.2 471,581 + BBR_RS12135 0.57 +1.2 471,581 + BBR_RS12135 0.57 +0.1 471,589 - BBR_RS12135 0.58 +0.2 471,589 - BBR_RS12135 0.58 -0.8 471,589 - BBR_RS12135 0.58 -0.7 471,589 - BBR_RS12135 0.58 -0.3 471,589 - BBR_RS12135 0.58 +1.0 471,589 - BBR_RS12135 0.58 -0.5 471,616 + BBR_RS12135 0.60 +0.9 471,623 + BBR_RS12135 0.60 +0.1 471,623 + BBR_RS12135 0.60 -0.5 471,624 - BBR_RS12135 0.61 -2.0 471,624 - BBR_RS12135 0.61 -1.5 471,631 - BBR_RS12135 0.61 -0.8 471,631 - BBR_RS12135 0.61 -0.2 471,631 - BBR_RS12135 0.61 +0.8 471,631 - BBR_RS12135 0.61 +0.3 471,631 - BBR_RS12135 0.61 -0.7 471,631 - BBR_RS12135 0.61 -0.2 471,646 - BBR_RS12135 0.62 +0.4 471,673 + BBR_RS12135 0.64 +0.1 471,673 + BBR_RS12135 0.64 +0.3 471,679 - BBR_RS12135 0.65 -2.0 471,681 - BBR_RS12135 0.65 +0.9 471,687 + BBR_RS12135 0.65 -0.6 471,687 + BBR_RS12135 0.65 -0.5 471,716 + BBR_RS12135 0.68 +0.3 471,722 - BBR_RS12135 0.68 -2.3 471,729 - BBR_RS12135 0.69 -0.5 471,736 - BBR_RS12135 0.69 -0.5
Or see this region's nucleotide sequence