Experiment: Adenosine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE53_000787 and ABIE53_000788 are separated by 123 nucleotides ABIE53_000788 and ABIE53_000789 are separated by 178 nucleotides
ABIE53_000787: ABIE53_000787 - FdhD protein, at 852,499 to 853,326
_000787
ABIE53_000788: ABIE53_000788 - hypothetical protein, at 853,450 to 853,926
_000788
ABIE53_000789: ABIE53_000789 - PAS domain S-box-containing protein, at 854,105 to 856,435
_000789
Position (kb) 853
854 Strain fitness (log2 ratio) -2
-1
0
1
2 at 852.518 kb on + strand at 852.518 kb on + strand at 852.518 kb on + strand at 852.519 kb on - strand at 852.519 kb on - strand at 852.527 kb on + strand at 852.527 kb on + strand at 852.527 kb on + strand at 852.527 kb on + strand at 852.527 kb on + strand at 852.527 kb on + strand at 852.528 kb on - strand at 852.528 kb on - strand at 852.659 kb on + strand, within ABIE53_000787 at 852.659 kb on + strand, within ABIE53_000787 at 852.659 kb on + strand, within ABIE53_000787 at 852.659 kb on + strand, within ABIE53_000787 at 852.660 kb on - strand, within ABIE53_000787 at 852.660 kb on - strand, within ABIE53_000787 at 852.660 kb on - strand, within ABIE53_000787 at 852.660 kb on - strand, within ABIE53_000787 at 852.660 kb on - strand, within ABIE53_000787 at 852.660 kb on - strand, within ABIE53_000787 at 852.660 kb on - strand, within ABIE53_000787 at 852.660 kb on - strand, within ABIE53_000787 at 852.660 kb on - strand, within ABIE53_000787 at 852.660 kb on - strand, within ABIE53_000787 at 852.660 kb on - strand, within ABIE53_000787 at 853.388 kb on + strand at 853.388 kb on + strand at 853.388 kb on + strand at 853.388 kb on + strand at 853.388 kb on + strand at 853.388 kb on + strand at 853.389 kb on - strand at 853.389 kb on - strand at 853.389 kb on - strand at 853.389 kb on - strand at 853.389 kb on - strand at 853.389 kb on - strand at 853.389 kb on - strand at 853.389 kb on - strand at 853.396 kb on + strand at 853.396 kb on + strand at 853.397 kb on - strand at 853.397 kb on - strand at 853.397 kb on - strand at 853.397 kb on - strand at 853.401 kb on + strand at 853.401 kb on + strand at 853.401 kb on + strand at 853.513 kb on + strand, within ABIE53_000788 at 853.513 kb on + strand, within ABIE53_000788 at 853.513 kb on + strand, within ABIE53_000788 at 853.513 kb on + strand, within ABIE53_000788 at 853.513 kb on + strand, within ABIE53_000788 at 853.513 kb on + strand, within ABIE53_000788 at 853.513 kb on + strand, within ABIE53_000788 at 853.513 kb on + strand, within ABIE53_000788 at 853.513 kb on + strand, within ABIE53_000788 at 853.514 kb on - strand, within ABIE53_000788 at 853.514 kb on - strand, within ABIE53_000788 at 853.514 kb on - strand, within ABIE53_000788 at 853.514 kb on - strand, within ABIE53_000788 at 853.514 kb on - strand, within ABIE53_000788 at 853.514 kb on - strand, within ABIE53_000788 at 853.514 kb on - strand, within ABIE53_000788 at 853.844 kb on - strand, within ABIE53_000788 at 854.024 kb on - strand at 854.024 kb on - strand at 854.142 kb on + strand at 854.142 kb on + strand at 854.142 kb on + strand at 854.142 kb on + strand at 854.143 kb on - strand at 854.143 kb on - strand at 854.143 kb on - strand at 854.143 kb on - strand at 854.537 kb on + strand, within ABIE53_000789 at 854.537 kb on + strand, within ABIE53_000789 at 854.537 kb on + strand, within ABIE53_000789 at 854.537 kb on + strand, within ABIE53_000789 at 854.538 kb on - strand, within ABIE53_000789 at 854.538 kb on - strand, within ABIE53_000789 at 854.819 kb on + strand, within ABIE53_000789 at 854.819 kb on + strand, within ABIE53_000789 at 854.819 kb on + strand, within ABIE53_000789 at 854.819 kb on + strand, within ABIE53_000789 at 854.819 kb on + strand, within ABIE53_000789 at 854.819 kb on + strand, within ABIE53_000789 at 854.819 kb on + strand, within ABIE53_000789 at 854.819 kb on + strand, within ABIE53_000789 at 854.819 kb on + strand, within ABIE53_000789 at 854.819 kb on + strand, within ABIE53_000789 at 854.819 kb on + strand, within ABIE53_000789 at 854.819 kb on + strand, within ABIE53_000789 at 854.820 kb on - strand, within ABIE53_000789 at 854.820 kb on - strand, within ABIE53_000789 at 854.820 kb on - strand, within ABIE53_000789 at 854.820 kb on - strand, within ABIE53_000789 at 854.820 kb on - strand, within ABIE53_000789 at 854.820 kb on - strand, within ABIE53_000789 at 854.820 kb on - strand, within ABIE53_000789 at 854.820 kb on - strand, within ABIE53_000789 at 854.820 kb on - strand, within ABIE53_000789 at 854.820 kb on - strand, within ABIE53_000789 at 854.820 kb on - strand, within ABIE53_000789 at 854.820 kb on - strand, within ABIE53_000789 at 854.820 kb on - strand, within ABIE53_000789 at 854.820 kb on - strand, within ABIE53_000789 at 854.821 kb on + strand, within ABIE53_000789 at 854.821 kb on + strand, within ABIE53_000789 at 854.821 kb on + strand, within ABIE53_000789 at 854.822 kb on - strand, within ABIE53_000789 at 854.879 kb on + strand, within ABIE53_000789 at 854.879 kb on + strand, within ABIE53_000789 at 854.879 kb on + strand, within ABIE53_000789 at 854.879 kb on + strand, within ABIE53_000789 at 854.879 kb on + strand, within ABIE53_000789 at 854.879 kb on + strand, within ABIE53_000789 at 854.880 kb on - strand, within ABIE53_000789 at 854.880 kb on - strand, within ABIE53_000789 at 854.880 kb on - strand, within ABIE53_000789 at 854.886 kb on - strand, within ABIE53_000789
Per-strain Table
Position Strand Gene LocusTag Fraction Adenosine (C) remove 852,518 + +1.6 852,518 + -1.1 852,518 + -1.0 852,519 - -1.3 852,519 - -0.1 852,527 + -0.4 852,527 + -1.1 852,527 + +0.7 852,527 + -0.4 852,527 + -0.5 852,527 + -0.0 852,528 - -1.7 852,528 - +0.5 852,659 + ABIE53_000787 0.19 -0.8 852,659 + ABIE53_000787 0.19 -1.1 852,659 + ABIE53_000787 0.19 -0.4 852,659 + ABIE53_000787 0.19 -1.7 852,660 - ABIE53_000787 0.19 +1.1 852,660 - ABIE53_000787 0.19 -1.2 852,660 - ABIE53_000787 0.19 -1.4 852,660 - ABIE53_000787 0.19 -0.5 852,660 - ABIE53_000787 0.19 -1.1 852,660 - ABIE53_000787 0.19 -0.9 852,660 - ABIE53_000787 0.19 +0.5 852,660 - ABIE53_000787 0.19 -0.6 852,660 - ABIE53_000787 0.19 -0.2 852,660 - ABIE53_000787 0.19 +0.7 852,660 - ABIE53_000787 0.19 +1.6 853,388 + +0.5 853,388 + +0.7 853,388 + +0.5 853,388 + -0.8 853,388 + -0.3 853,388 + -0.9 853,389 - -2.5 853,389 - -0.4 853,389 - -0.6 853,389 - +0.7 853,389 - +0.3 853,389 - -0.1 853,389 - -1.3 853,389 - -0.6 853,396 + -1.0 853,396 + -0.1 853,397 - +0.7 853,397 - -0.8 853,397 - -0.3 853,397 - -0.5 853,401 + +0.2 853,401 + -0.7 853,401 + -1.2 853,513 + ABIE53_000788 0.13 +0.7 853,513 + ABIE53_000788 0.13 +0.3 853,513 + ABIE53_000788 0.13 +1.1 853,513 + ABIE53_000788 0.13 -0.5 853,513 + ABIE53_000788 0.13 -0.1 853,513 + ABIE53_000788 0.13 -0.2 853,513 + ABIE53_000788 0.13 +0.3 853,513 + ABIE53_000788 0.13 -0.7 853,513 + ABIE53_000788 0.13 -0.6 853,514 - ABIE53_000788 0.13 -0.6 853,514 - ABIE53_000788 0.13 +1.8 853,514 - ABIE53_000788 0.13 +0.9 853,514 - ABIE53_000788 0.13 -1.1 853,514 - ABIE53_000788 0.13 +0.3 853,514 - ABIE53_000788 0.13 +0.7 853,514 - ABIE53_000788 0.13 +0.1 853,844 - ABIE53_000788 0.83 +0.4 854,024 - -2.4 854,024 - -0.4 854,142 + +0.5 854,142 + -0.1 854,142 + +0.5 854,142 + +0.9 854,143 - -1.3 854,143 - -0.3 854,143 - +0.8 854,143 - -1.0 854,537 + ABIE53_000789 0.19 -0.6 854,537 + ABIE53_000789 0.19 -0.4 854,537 + ABIE53_000789 0.19 -1.8 854,537 + ABIE53_000789 0.19 -0.1 854,538 - ABIE53_000789 0.19 -0.6 854,538 - ABIE53_000789 0.19 -0.1 854,819 + ABIE53_000789 0.31 -1.4 854,819 + ABIE53_000789 0.31 +2.1 854,819 + ABIE53_000789 0.31 -0.3 854,819 + ABIE53_000789 0.31 +0.2 854,819 + ABIE53_000789 0.31 -1.4 854,819 + ABIE53_000789 0.31 +0.2 854,819 + ABIE53_000789 0.31 -0.5 854,819 + ABIE53_000789 0.31 -0.2 854,819 + ABIE53_000789 0.31 +1.2 854,819 + ABIE53_000789 0.31 +0.9 854,819 + ABIE53_000789 0.31 -0.9 854,819 + ABIE53_000789 0.31 +1.3 854,820 - ABIE53_000789 0.31 +0.5 854,820 - ABIE53_000789 0.31 +0.9 854,820 - ABIE53_000789 0.31 +0.3 854,820 - ABIE53_000789 0.31 -0.5 854,820 - ABIE53_000789 0.31 +0.2 854,820 - ABIE53_000789 0.31 +0.3 854,820 - ABIE53_000789 0.31 -0.7 854,820 - ABIE53_000789 0.31 -0.3 854,820 - ABIE53_000789 0.31 -2.4 854,820 - ABIE53_000789 0.31 +1.5 854,820 - ABIE53_000789 0.31 +1.1 854,820 - ABIE53_000789 0.31 +0.9 854,820 - ABIE53_000789 0.31 +0.2 854,820 - ABIE53_000789 0.31 -1.1 854,821 + ABIE53_000789 0.31 -1.0 854,821 + ABIE53_000789 0.31 +1.5 854,821 + ABIE53_000789 0.31 +1.3 854,822 - ABIE53_000789 0.31 -1.8 854,879 + ABIE53_000789 0.33 -0.4 854,879 + ABIE53_000789 0.33 -0.6 854,879 + ABIE53_000789 0.33 +0.1 854,879 + ABIE53_000789 0.33 -0.8 854,879 + ABIE53_000789 0.33 -0.5 854,879 + ABIE53_000789 0.33 -1.5 854,880 - ABIE53_000789 0.33 -0.5 854,880 - ABIE53_000789 0.33 -1.6 854,880 - ABIE53_000789 0.33 -0.1 854,886 - ABIE53_000789 0.34 -1.3
Or see this region's nucleotide sequence