Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc04194 and SMc04195 are separated by 379 nucleotides
SMc04194: SMc04194 - transmembrane protein, at 2,181,031 to 2,181,228
SMc04194
SMc04195: SMc04195 - transposase ISRM3, at 2,181,608 to 2,182,810
SMc04195
Position (kb)
2181
2182 Strain fitness (log2 ratio)
-2
-1
0
1 at 2180.232 kb on + strand at 2180.460 kb on + strand at 2180.461 kb on - strand at 2180.637 kb on - strand at 2180.656 kb on + strand at 2180.656 kb on + strand at 2180.656 kb on + strand at 2180.657 kb on - strand at 2180.657 kb on - strand at 2180.657 kb on - strand at 2180.657 kb on - strand at 2180.657 kb on - strand at 2180.657 kb on - strand at 2180.657 kb on - strand at 2180.737 kb on - strand at 2180.744 kb on + strand at 2180.744 kb on + strand at 2180.749 kb on + strand at 2180.751 kb on + strand at 2180.764 kb on + strand at 2180.764 kb on + strand at 2180.765 kb on - strand at 2180.818 kb on - strand at 2180.818 kb on - strand at 2180.818 kb on - strand at 2180.818 kb on - strand at 2180.819 kb on + strand at 2180.819 kb on + strand at 2180.819 kb on + strand at 2180.820 kb on - strand at 2180.822 kb on - strand at 2180.822 kb on - strand at 2180.835 kb on + strand at 2181.049 kb on + strand at 2181.049 kb on + strand at 2181.050 kb on - strand at 2181.050 kb on - strand at 2181.066 kb on + strand, within SMc04194 at 2181.084 kb on - strand, within SMc04194 at 2181.084 kb on - strand, within SMc04194 at 2181.084 kb on - strand, within SMc04194 at 2181.084 kb on - strand, within SMc04194 at 2181.084 kb on - strand, within SMc04194 at 2181.140 kb on + strand, within SMc04194 at 2181.140 kb on + strand, within SMc04194 at 2181.270 kb on - strand at 2181.320 kb on + strand at 2181.321 kb on - strand at 2181.381 kb on + strand at 2181.403 kb on - strand at 2181.448 kb on + strand at 2181.448 kb on + strand at 2181.464 kb on - strand at 2181.514 kb on + strand at 2181.515 kb on - strand at 2181.515 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 2,180,232 + +1.2 2,180,460 + +0.1 2,180,461 - -0.6 2,180,637 - -0.3 2,180,656 + +0.9 2,180,656 + -0.4 2,180,656 + +0.3 2,180,657 - +0.9 2,180,657 - +0.5 2,180,657 - +0.1 2,180,657 - +0.1 2,180,657 - +0.6 2,180,657 - +0.3 2,180,657 - -0.3 2,180,737 - -0.2 2,180,744 + -0.3 2,180,744 + +0.0 2,180,749 + +0.3 2,180,751 + -0.2 2,180,764 + +0.2 2,180,764 + +0.9 2,180,765 - +0.4 2,180,818 - +0.6 2,180,818 - -0.1 2,180,818 - +0.5 2,180,818 - -0.6 2,180,819 + +0.2 2,180,819 + -0.3 2,180,819 + +1.3 2,180,820 - +0.1 2,180,822 - +0.3 2,180,822 - +0.4 2,180,835 + +1.6 2,181,049 + +0.9 2,181,049 + +0.4 2,181,050 - +0.2 2,181,050 - +0.2 2,181,066 + SMc04194 0.18 -0.6 2,181,084 - SMc04194 0.27 +0.2 2,181,084 - SMc04194 0.27 +0.0 2,181,084 - SMc04194 0.27 +0.8 2,181,084 - SMc04194 0.27 -0.6 2,181,084 - SMc04194 0.27 +0.3 2,181,140 + SMc04194 0.55 +1.1 2,181,140 + SMc04194 0.55 -0.6 2,181,270 - +0.2 2,181,320 + -0.8 2,181,321 - -1.8 2,181,381 + -0.5 2,181,403 - -0.5 2,181,448 + -0.1 2,181,448 + +0.8 2,181,464 - +0.2 2,181,514 + -0.0 2,181,515 - -0.5 2,181,515 - -0.8
Or see this region's nucleotide sequence