Strain Fitness in Sinorhizobium meliloti 1021 around SMc04006
Experiment: LB
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | LB |
---|---|---|---|---|---|
remove | |||||
3,000,496 | + | SMc04005 | 0.34 | +0.2 | |
3,000,557 | + | SMc04005 | 0.38 | +0.8 | |
3,000,959 | + | SMc04005 | 0.66 | +0.5 | |
3,000,959 | + | SMc04005 | 0.66 | +1.5 | |
3,001,126 | + | SMc04005 | 0.78 | +0.6 | |
3,002,038 | + | -0.5 | |||
3,002,039 | - | -0.7 | |||
3,002,092 | - | +0.4 | |||
3,002,124 | + | -2.1 | |||
3,002,125 | - | -1.1 | |||
3,002,133 | + | -0.3 | |||
3,002,134 | - | -1.4 | |||
3,002,211 | + | SMc04007 | 0.12 | +0.6 | |
3,002,211 | + | SMc04007 | 0.12 | -0.5 | |
3,002,260 | - | SMc04007 | 0.18 | +0.4 | |
3,002,264 | + | SMc04007 | 0.19 | +0.4 | |
3,002,456 | - | SMc04007 | 0.43 | -0.3 | |
3,002,475 | + | SMc04007 | 0.45 | +0.3 | |
3,002,476 | - | SMc04007 | 0.45 | -0.8 | |
3,002,488 | + | SMc04007 | 0.47 | +0.5 | |
3,002,691 | + | SMc04007 | 0.72 | +0.5 | |
3,002,692 | - | SMc04007 | 0.73 | +0.1 | |
3,002,715 | - | SMc04007 | 0.75 | -0.3 | |
3,002,721 | + | SMc04007 | 0.76 | -0.2 | |
3,002,722 | - | SMc04007 | 0.76 | -0.9 | |
3,002,722 | - | SMc04007 | 0.76 | -0.5 | |
3,002,868 | + | -1.0 |
Or see this region's nucleotide sequence