Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc03925 and SMc03926 are separated by 229 nucleotides SMc03926 and SMc03927 are separated by 152 nucleotides SMc03927 and SMc03928 overlap by 8 nucleotides
SMc03925: SMc03925 - phosphoglucomutase, at 3,072,749 to 3,074,377
SMc03925
SMc03926: SMc03926 - glycosyl hydrolase, at 3,074,607 to 3,076,595
SMc03926
SMc03927: SMc03927 - nodulation protein, at 3,076,748 to 3,077,236
SMc03927
SMc03928: SMc03928 - hypothetical protein, at 3,077,229 to 3,078,305
SMc03928
Position (kb)
3074
3075
3076
3077 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3074.516 kb on - strand at 3074.516 kb on - strand at 3074.560 kb on - strand at 3074.667 kb on - strand at 3074.667 kb on - strand at 3074.791 kb on + strand at 3074.792 kb on - strand at 3074.792 kb on - strand at 3074.792 kb on - strand at 3074.792 kb on - strand at 3074.792 kb on - strand at 3074.792 kb on - strand at 3074.833 kb on - strand, within SMc03926 at 3074.886 kb on + strand, within SMc03926 at 3074.887 kb on - strand, within SMc03926 at 3075.037 kb on - strand, within SMc03926 at 3075.238 kb on - strand, within SMc03926 at 3075.238 kb on - strand, within SMc03926 at 3075.426 kb on + strand, within SMc03926 at 3075.427 kb on - strand, within SMc03926 at 3075.427 kb on - strand, within SMc03926 at 3075.429 kb on + strand, within SMc03926 at 3075.429 kb on + strand, within SMc03926 at 3075.998 kb on + strand, within SMc03926 at 3076.089 kb on - strand, within SMc03926 at 3076.089 kb on - strand, within SMc03926 at 3076.161 kb on + strand, within SMc03926 at 3076.161 kb on + strand, within SMc03926 at 3076.161 kb on + strand, within SMc03926 at 3076.625 kb on + strand at 3076.626 kb on - strand at 3076.711 kb on + strand at 3076.713 kb on + strand at 3076.713 kb on + strand at 3076.713 kb on + strand at 3076.713 kb on + strand at 3076.714 kb on - strand at 3077.261 kb on - strand at 3077.494 kb on - strand, within SMc03928
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 3,074,516 - -0.2 3,074,516 - -0.8 3,074,560 - +0.1 3,074,667 - +0.2 3,074,667 - -0.7 3,074,791 + +0.1 3,074,792 - -1.2 3,074,792 - -0.5 3,074,792 - -0.8 3,074,792 - +0.5 3,074,792 - -0.9 3,074,792 - -1.8 3,074,833 - SMc03926 0.11 -0.2 3,074,886 + SMc03926 0.14 -0.2 3,074,887 - SMc03926 0.14 -1.1 3,075,037 - SMc03926 0.22 -0.9 3,075,238 - SMc03926 0.32 -0.4 3,075,238 - SMc03926 0.32 -0.3 3,075,426 + SMc03926 0.41 -0.1 3,075,427 - SMc03926 0.41 -0.1 3,075,427 - SMc03926 0.41 -0.2 3,075,429 + SMc03926 0.41 +0.1 3,075,429 + SMc03926 0.41 -1.4 3,075,998 + SMc03926 0.70 -0.9 3,076,089 - SMc03926 0.75 -0.8 3,076,089 - SMc03926 0.75 -0.0 3,076,161 + SMc03926 0.78 -0.1 3,076,161 + SMc03926 0.78 -0.4 3,076,161 + SMc03926 0.78 -0.0 3,076,625 + +0.1 3,076,626 - -0.7 3,076,711 + +0.1 3,076,713 + +2.5 3,076,713 + +0.8 3,076,713 + +0.7 3,076,713 + -0.1 3,076,714 - -1.3 3,077,261 - +0.0 3,077,494 - SMc03928 0.25 +0.9
Or see this region's nucleotide sequence