Strain Fitness in Sinorhizobium meliloti 1021 around SMc03793

Experiment: LB

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSMc03790 and SMc03791 are separated by 169 nucleotidesSMc03791 and SMc03792 are separated by 84 nucleotidesSMc03792 and SMc03793 overlap by 4 nucleotidesSMc03793 and SMc03794 are separated by 121 nucleotidesSMc03794 and SMc03795 are separated by 147 nucleotides SMc03790: SMc03790 - hypothetical protein, at 3,457,313 to 3,458,266 SMc03790 SMc03791: SMc03791 - hypothetical protein, at 3,458,436 to 3,458,870 SMc03791 SMc03792: SMc03792 - hypothetical protein, at 3,458,955 to 3,459,161 SMc03792 SMc03793: SMc03793 - citrate lyase subunit beta, at 3,459,158 to 3,460,060 SMc03793 SMc03794: SMc03794 - hypothetical protein, at 3,460,182 to 3,460,433 SMc03794 SMc03795: SMc03795 - isopropylmalate isomerase small subunit, at 3,460,581 to 3,461,186 SMc03795 Position (kb) 3459 3460 3461Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3458.410 kb on + strandat 3458.412 kb on + strandat 3458.413 kb on - strandat 3458.413 kb on - strandat 3458.413 kb on - strandat 3458.495 kb on - strand, within SMc03791at 3458.520 kb on + strand, within SMc03791at 3458.521 kb on - strand, within SMc03791at 3458.521 kb on - strand, within SMc03791at 3458.521 kb on - strand, within SMc03791at 3458.521 kb on - strand, within SMc03791at 3458.769 kb on - strand, within SMc03791at 3458.769 kb on - strand, within SMc03791at 3458.986 kb on + strand, within SMc03792at 3458.987 kb on - strand, within SMc03792at 3459.058 kb on + strand, within SMc03792at 3459.059 kb on - strand, within SMc03792at 3459.532 kb on - strand, within SMc03793at 3459.532 kb on - strand, within SMc03793at 3459.532 kb on - strand, within SMc03793at 3459.740 kb on - strand, within SMc03793at 3460.432 kb on - strandat 3460.457 kb on - strandat 3460.538 kb on + strandat 3460.723 kb on - strand, within SMc03795at 3460.902 kb on + strand, within SMc03795

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB
remove
3,458,410 + +0.3
3,458,412 + +0.7
3,458,413 - -0.5
3,458,413 - -0.9
3,458,413 - -1.1
3,458,495 - SMc03791 0.14 +0.5
3,458,520 + SMc03791 0.19 -0.8
3,458,521 - SMc03791 0.20 +2.0
3,458,521 - SMc03791 0.20 -0.2
3,458,521 - SMc03791 0.20 -0.9
3,458,521 - SMc03791 0.20 +0.5
3,458,769 - SMc03791 0.77 +0.3
3,458,769 - SMc03791 0.77 -0.4
3,458,986 + SMc03792 0.15 +0.0
3,458,987 - SMc03792 0.15 +0.1
3,459,058 + SMc03792 0.50 +2.8
3,459,059 - SMc03792 0.50 +0.0
3,459,532 - SMc03793 0.41 -0.7
3,459,532 - SMc03793 0.41 -0.2
3,459,532 - SMc03793 0.41 -0.9
3,459,740 - SMc03793 0.64 -0.5
3,460,432 - -0.3
3,460,457 - -0.3
3,460,538 + -1.9
3,460,723 - SMc03795 0.23 +0.4
3,460,902 + SMc03795 0.53 +0.1

Or see this region's nucleotide sequence