Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02682 and SMc02683 are separated by 162 nucleotides SMc02683 and SMc02684 are separated by 1 nucleotides SMc02684 and SMc02685 are separated by 147 nucleotides
SMc02682: SMc02682 - hypothetical protein, at 2,530,958 to 2,532,076
SMc02682
SMc02683: SMc02683 - hypothetical protein, at 2,532,239 to 2,533,033
SMc02683
SMc02684: SMc02684 - hydrolase/peptidase, at 2,533,035 to 2,534,186
SMc02684
SMc02685: SMc02685 - hypothetical protein, at 2,534,334 to 2,535,212
SMc02685
Position (kb)
2533
2534
2535 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2532.074 kb on + strand at 2532.258 kb on + strand at 2532.691 kb on + strand, within SMc02683 at 2532.692 kb on - strand, within SMc02683 at 2532.812 kb on + strand, within SMc02683 at 2532.813 kb on - strand, within SMc02683 at 2532.813 kb on - strand, within SMc02683 at 2532.959 kb on + strand at 2532.960 kb on - strand at 2532.992 kb on + strand at 2533.005 kb on + strand at 2533.062 kb on + strand at 2533.062 kb on + strand at 2533.062 kb on + strand at 2533.063 kb on - strand at 2533.121 kb on - strand at 2533.170 kb on + strand, within SMc02684 at 2533.176 kb on + strand, within SMc02684 at 2533.263 kb on - strand, within SMc02684 at 2533.263 kb on - strand at 2533.288 kb on + strand, within SMc02684 at 2533.288 kb on + strand, within SMc02684 at 2533.381 kb on - strand, within SMc02684 at 2533.768 kb on - strand, within SMc02684 at 2533.768 kb on - strand, within SMc02684 at 2533.830 kb on + strand, within SMc02684 at 2533.831 kb on - strand, within SMc02684 at 2533.864 kb on - strand, within SMc02684 at 2534.121 kb on + strand at 2534.160 kb on + strand at 2534.177 kb on - strand at 2534.604 kb on - strand, within SMc02685 at 2534.604 kb on - strand, within SMc02685 at 2534.610 kb on + strand, within SMc02685 at 2534.610 kb on + strand, within SMc02685 at 2534.675 kb on - strand, within SMc02685 at 2534.837 kb on + strand, within SMc02685 at 2534.837 kb on + strand, within SMc02685 at 2534.838 kb on - strand, within SMc02685 at 2535.037 kb on - strand, within SMc02685 at 2535.049 kb on + strand, within SMc02685 at 2535.180 kb on + strand at 2535.181 kb on - strand at 2535.181 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 2,532,074 + -0.5 2,532,258 + -1.6 2,532,691 + SMc02683 0.57 -2.1 2,532,692 - SMc02683 0.57 -2.2 2,532,812 + SMc02683 0.72 -0.2 2,532,813 - SMc02683 0.72 -1.1 2,532,813 - SMc02683 0.72 +0.4 2,532,959 + -2.0 2,532,960 - -1.5 2,532,992 + -3.7 2,533,005 + -1.8 2,533,062 + +0.5 2,533,062 + +0.9 2,533,062 + +0.9 2,533,063 - +0.9 2,533,121 - +2.0 2,533,170 + SMc02684 0.12 +1.1 2,533,176 + SMc02684 0.12 +1.3 2,533,263 - SMc02684 0.20 +0.5 2,533,263 - +0.5 2,533,288 + SMc02684 0.22 +1.2 2,533,288 + SMc02684 0.22 +0.7 2,533,381 - SMc02684 0.30 +0.9 2,533,768 - SMc02684 0.64 +1.2 2,533,768 - SMc02684 0.64 +1.0 2,533,830 + SMc02684 0.69 +0.8 2,533,831 - SMc02684 0.69 +0.5 2,533,864 - SMc02684 0.72 +0.5 2,534,121 + +0.2 2,534,160 + +1.1 2,534,177 - +1.0 2,534,604 - SMc02685 0.31 +0.8 2,534,604 - SMc02685 0.31 +1.2 2,534,610 + SMc02685 0.31 -0.8 2,534,610 + SMc02685 0.31 -1.1 2,534,675 - SMc02685 0.39 +0.2 2,534,837 + SMc02685 0.57 -1.3 2,534,837 + SMc02685 0.57 -1.2 2,534,838 - SMc02685 0.57 -1.3 2,535,037 - SMc02685 0.80 +0.2 2,535,049 + SMc02685 0.81 -0.2 2,535,180 + -1.1 2,535,181 - -2.4 2,535,181 - +0.6
Or see this region's nucleotide sequence