Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02525 and SMc02524 overlap by 4 nucleotides SMc02524 and SMc02523 are separated by 176 nucleotides SMc02523 and SMc02522 are separated by 157 nucleotides
SMc02525: SMc02525 - NAD-dependent formate dehydrogenase subunit beta, at 3,266,173 to 3,267,729
SMc02525
SMc02524: SMc02524 - formate dehydrogenase subunit gamma, at 3,267,726 to 3,268,205
SMc02524
SMc02523: SMc02523 - transcriptional regulator, at 3,268,382 to 3,269,278
SMc02523
SMc02522: SMc02522 - oxidoreductase, at 3,269,436 to 3,270,206
SMc02522
Position (kb)
3268
3269
3270 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3267.713 kb on + strand at 3267.714 kb on - strand at 3267.714 kb on - strand at 3267.835 kb on + strand, within SMc02524 at 3267.835 kb on + strand, within SMc02524 at 3267.835 kb on + strand, within SMc02524 at 3267.835 kb on + strand, within SMc02524 at 3267.836 kb on - strand, within SMc02524 at 3268.003 kb on + strand, within SMc02524 at 3268.021 kb on + strand, within SMc02524 at 3268.022 kb on - strand, within SMc02524 at 3268.022 kb on - strand, within SMc02524 at 3268.022 kb on - strand, within SMc02524 at 3268.084 kb on + strand, within SMc02524 at 3268.085 kb on - strand, within SMc02524 at 3268.199 kb on + strand at 3268.351 kb on + strand at 3268.351 kb on + strand at 3268.555 kb on + strand, within SMc02523 at 3268.555 kb on + strand, within SMc02523 at 3268.556 kb on - strand, within SMc02523 at 3268.556 kb on - strand, within SMc02523 at 3268.703 kb on + strand, within SMc02523 at 3268.777 kb on + strand, within SMc02523 at 3268.778 kb on - strand, within SMc02523 at 3268.788 kb on + strand, within SMc02523 at 3268.789 kb on - strand, within SMc02523 at 3269.005 kb on + strand, within SMc02523 at 3269.006 kb on - strand, within SMc02523 at 3269.006 kb on - strand at 3269.006 kb on - strand, within SMc02523 at 3269.053 kb on + strand, within SMc02523 at 3269.054 kb on - strand, within SMc02523 at 3269.054 kb on - strand, within SMc02523 at 3269.289 kb on + strand at 3269.290 kb on - strand at 3269.325 kb on + strand at 3269.483 kb on + strand at 3269.485 kb on + strand at 3269.602 kb on + strand, within SMc02522 at 3269.696 kb on - strand, within SMc02522 at 3269.725 kb on + strand, within SMc02522 at 3269.725 kb on + strand, within SMc02522 at 3269.725 kb on + strand, within SMc02522 at 3269.726 kb on - strand, within SMc02522 at 3270.089 kb on + strand, within SMc02522 at 3270.089 kb on + strand, within SMc02522 at 3270.090 kb on - strand, within SMc02522 at 3270.090 kb on - strand, within SMc02522 at 3270.202 kb on + strand at 3270.203 kb on - strand at 3270.203 kb on - strand at 3270.257 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 3,267,713 + +0.1 3,267,714 - +0.3 3,267,714 - -0.1 3,267,835 + SMc02524 0.23 -0.6 3,267,835 + SMc02524 0.23 +0.9 3,267,835 + SMc02524 0.23 +0.1 3,267,835 + SMc02524 0.23 +0.5 3,267,836 - SMc02524 0.23 +0.1 3,268,003 + SMc02524 0.58 +0.2 3,268,021 + SMc02524 0.61 +0.9 3,268,022 - SMc02524 0.62 +0.1 3,268,022 - SMc02524 0.62 +0.6 3,268,022 - SMc02524 0.62 +0.8 3,268,084 + SMc02524 0.75 +0.2 3,268,085 - SMc02524 0.75 +0.4 3,268,199 + +0.4 3,268,351 + +0.3 3,268,351 + -0.5 3,268,555 + SMc02523 0.19 -0.0 3,268,555 + SMc02523 0.19 -0.7 3,268,556 - SMc02523 0.19 +0.5 3,268,556 - SMc02523 0.19 +0.2 3,268,703 + SMc02523 0.36 -0.5 3,268,777 + SMc02523 0.44 +0.2 3,268,778 - SMc02523 0.44 -1.5 3,268,788 + SMc02523 0.45 -0.4 3,268,789 - SMc02523 0.45 +2.5 3,269,005 + SMc02523 0.69 -0.1 3,269,006 - SMc02523 0.70 +0.0 3,269,006 - +1.3 3,269,006 - SMc02523 0.70 -1.0 3,269,053 + SMc02523 0.75 +0.0 3,269,054 - SMc02523 0.75 -0.0 3,269,054 - SMc02523 0.75 +0.0 3,269,289 + -0.1 3,269,290 - +0.7 3,269,325 + -2.0 3,269,483 + +1.2 3,269,485 + +0.1 3,269,602 + SMc02522 0.22 -0.5 3,269,696 - SMc02522 0.34 +0.5 3,269,725 + SMc02522 0.37 +0.7 3,269,725 + SMc02522 0.37 -1.4 3,269,725 + SMc02522 0.37 +0.7 3,269,726 - SMc02522 0.38 +0.1 3,270,089 + SMc02522 0.85 -0.7 3,270,089 + SMc02522 0.85 +0.2 3,270,090 - SMc02522 0.85 -0.0 3,270,090 - SMc02522 0.85 -0.2 3,270,202 + -0.0 3,270,203 - -0.1 3,270,203 - -0.9 3,270,257 - -0.9
Or see this region's nucleotide sequence