Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02491 and SMc02490 are separated by 9 nucleotides SMc02490 and SMc02489 are separated by 120 nucleotides
SMc02491: SMc02491 - hypothetical protein, at 3,303,428 to 3,304,564
SMc02491
SMc02490: SMc02490 - hypothetical protein, at 3,304,574 to 3,305,497
SMc02490
SMc02489: SMc02489 - site-specific tyrosine recombinase XerC, at 3,305,618 to 3,306,610
SMc02489
Position (kb)
3304
3305
3306 Strain fitness (log2 ratio)
-1
0
1
2 at 3303.625 kb on + strand, within SMc02491 at 3303.626 kb on - strand, within SMc02491 at 3303.686 kb on + strand, within SMc02491 at 3303.865 kb on + strand, within SMc02491 at 3304.105 kb on - strand, within SMc02491 at 3304.141 kb on + strand, within SMc02491 at 3304.142 kb on - strand, within SMc02491 at 3304.153 kb on + strand, within SMc02491 at 3304.328 kb on - strand, within SMc02491 at 3304.450 kb on - strand, within SMc02491 at 3304.534 kb on - strand at 3304.583 kb on + strand at 3304.584 kb on - strand at 3304.584 kb on - strand at 3304.645 kb on + strand at 3304.646 kb on - strand at 3304.646 kb on - strand at 3304.646 kb on - strand at 3304.807 kb on - strand, within SMc02490 at 3304.807 kb on - strand, within SMc02490 at 3304.860 kb on + strand, within SMc02490 at 3304.860 kb on + strand, within SMc02490 at 3304.926 kb on + strand, within SMc02490 at 3305.025 kb on + strand, within SMc02490 at 3305.025 kb on + strand, within SMc02490 at 3305.026 kb on - strand, within SMc02490 at 3305.026 kb on - strand, within SMc02490 at 3305.209 kb on + strand, within SMc02490 at 3305.285 kb on - strand, within SMc02490 at 3305.322 kb on + strand, within SMc02490 at 3305.337 kb on + strand, within SMc02490 at 3305.338 kb on - strand, within SMc02490 at 3305.408 kb on - strand at 3305.537 kb on + strand at 3305.538 kb on - strand at 3305.538 kb on - strand at 3305.538 kb on - strand at 3305.592 kb on - strand at 3305.784 kb on - strand, within SMc02489 at 3306.153 kb on - strand, within SMc02489
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 3,303,625 + SMc02491 0.17 -0.3 3,303,626 - SMc02491 0.17 -0.4 3,303,686 + SMc02491 0.23 -0.2 3,303,865 + SMc02491 0.38 +0.5 3,304,105 - SMc02491 0.60 -0.1 3,304,141 + SMc02491 0.63 +0.2 3,304,142 - SMc02491 0.63 +0.1 3,304,153 + SMc02491 0.64 +0.5 3,304,328 - SMc02491 0.79 -0.1 3,304,450 - SMc02491 0.90 -0.6 3,304,534 - -1.6 3,304,583 + +0.8 3,304,584 - +1.4 3,304,584 - -0.2 3,304,645 + +1.4 3,304,646 - +1.1 3,304,646 - +1.6 3,304,646 - +1.3 3,304,807 - SMc02490 0.25 +1.8 3,304,807 - SMc02490 0.25 +2.0 3,304,860 + SMc02490 0.31 +1.9 3,304,860 + SMc02490 0.31 +2.3 3,304,926 + SMc02490 0.38 +1.9 3,305,025 + SMc02490 0.49 +1.3 3,305,025 + SMc02490 0.49 +2.6 3,305,026 - SMc02490 0.49 +1.6 3,305,026 - SMc02490 0.49 +2.2 3,305,209 + SMc02490 0.69 +1.4 3,305,285 - SMc02490 0.77 +0.9 3,305,322 + SMc02490 0.81 +0.4 3,305,337 + SMc02490 0.83 +1.0 3,305,338 - SMc02490 0.83 +1.1 3,305,408 - +2.3 3,305,537 + +0.8 3,305,538 - +1.2 3,305,538 - +0.0 3,305,538 - +0.2 3,305,592 - -0.2 3,305,784 - SMc02489 0.17 -0.3 3,306,153 - SMc02489 0.54 +0.4
Or see this region's nucleotide sequence