Strain Fitness in Sinorhizobium meliloti 1021 around SMc02477

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc02478 and SMc02477 are separated by 41 nucleotidesSMc02477 and SMc02476 are separated by 7 nucleotidesSMc02476 and SMc02475 are separated by 217 nucleotides SMc02478: SMc02478 - hypothetical protein, at 3,319,643 to 3,320,797 SMc02478 SMc02477: SMc02477 - hypothetical protein, at 3,320,839 to 3,321,105 SMc02477 SMc02476: SMc02476 - hypothetical protein, at 3,321,113 to 3,321,391 SMc02476 SMc02475: SMc02475 - outer membrane lipoprotein, at 3,321,609 to 3,322,148 SMc02475 Position (kb) 3320 3321 3322Strain fitness (log2 ratio) -1 0 1 2at 3320.174 kb on + strand, within SMc02478at 3320.460 kb on + strand, within SMc02478at 3320.460 kb on + strand, within SMc02478at 3320.460 kb on + strand, within SMc02478at 3320.460 kb on + strand, within SMc02478at 3320.461 kb on - strand, within SMc02478at 3320.461 kb on - strand, within SMc02478at 3320.461 kb on - strand, within SMc02478at 3320.585 kb on - strand, within SMc02478at 3320.586 kb on + strand, within SMc02478at 3320.586 kb on + strand, within SMc02478at 3320.586 kb on + strand, within SMc02478at 3320.586 kb on + strand, within SMc02478at 3320.587 kb on - strand, within SMc02478at 3320.587 kb on - strand, within SMc02478at 3320.587 kb on - strand, within SMc02478at 3320.587 kb on - strand, within SMc02478at 3320.587 kb on - strand, within SMc02478at 3320.587 kb on - strand, within SMc02478at 3320.809 kb on - strandat 3320.809 kb on - strandat 3321.141 kb on + strand, within SMc02476at 3321.142 kb on - strand, within SMc02476at 3321.202 kb on - strand, within SMc02476at 3321.502 kb on + strandat 3321.518 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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3,320,174 + SMc02478 0.46 +0.3
3,320,460 + SMc02478 0.71 +0.6
3,320,460 + SMc02478 0.71 +1.4
3,320,460 + SMc02478 0.71 +1.0
3,320,460 + SMc02478 0.71 +0.5
3,320,461 - SMc02478 0.71 +1.5
3,320,461 - SMc02478 0.71 +1.2
3,320,461 - SMc02478 0.71 +1.3
3,320,585 - SMc02478 0.82 +1.0
3,320,586 + SMc02478 0.82 -0.3
3,320,586 + SMc02478 0.82 +0.3
3,320,586 + SMc02478 0.82 +0.4
3,320,586 + SMc02478 0.82 +2.1
3,320,587 - SMc02478 0.82 +1.5
3,320,587 - SMc02478 0.82 -1.1
3,320,587 - SMc02478 0.82 -1.5
3,320,587 - SMc02478 0.82 -0.2
3,320,587 - SMc02478 0.82 +0.8
3,320,587 - SMc02478 0.82 +1.2
3,320,809 - -1.0
3,320,809 - -0.4
3,321,141 + SMc02476 0.10 +0.3
3,321,142 - SMc02476 0.10 -0.5
3,321,202 - SMc02476 0.32 +0.0
3,321,502 + -0.3
3,321,518 - +0.0

Or see this region's nucleotide sequence