Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02221 and SMc02222 are separated by 112 nucleotides SMc02222 and SMc02223 are separated by 9 nucleotides SMc02223 and SMc02224 are separated by 225 nucleotides
SMc02221: SMc02221 - hypothetical protein, at 583,276 to 583,686
SMc02221
SMc02222: SMc02222 - hypothetical protein, at 583,799 to 584,605
SMc02222
SMc02223: SMc02223 - transcriptional regulator, at 584,615 to 585,271
SMc02223
SMc02224: SMc02224 - calcium/proton antiporter transmembrane protein, at 585,497 to 586,582
SMc02224
Position (kb) 584
585
586 Strain fitness (log2 ratio) -1
0
1
2
3 at 583.728 kb on + strand at 583.729 kb on - strand at 583.781 kb on - strand at 583.801 kb on - strand at 583.801 kb on - strand at 583.801 kb on - strand at 584.167 kb on + strand, within SMc02222 at 584.554 kb on - strand at 584.554 kb on - strand at 584.616 kb on + strand at 584.617 kb on - strand at 584.874 kb on + strand, within SMc02223 at 584.874 kb on + strand, within SMc02223 at 584.875 kb on - strand, within SMc02223 at 584.875 kb on - strand, within SMc02223 at 584.875 kb on - strand, within SMc02223 at 584.875 kb on - strand, within SMc02223 at 585.095 kb on + strand, within SMc02223 at 585.096 kb on - strand, within SMc02223 at 585.096 kb on - strand, within SMc02223 at 585.338 kb on - strand at 585.383 kb on - strand at 585.412 kb on + strand at 585.412 kb on + strand at 585.464 kb on + strand at 585.464 kb on + strand at 585.800 kb on - strand, within SMc02224 at 585.806 kb on + strand, within SMc02224 at 585.806 kb on + strand, within SMc02224 at 585.806 kb on + strand, within SMc02224 at 585.807 kb on - strand, within SMc02224 at 585.807 kb on - strand, within SMc02224 at 585.887 kb on + strand, within SMc02224 at 585.887 kb on + strand, within SMc02224 at 585.887 kb on + strand, within SMc02224 at 585.887 kb on + strand, within SMc02224 at 585.889 kb on + strand, within SMc02224 at 585.912 kb on - strand, within SMc02224 at 585.986 kb on + strand, within SMc02224 at 585.987 kb on - strand, within SMc02224 at 586.025 kb on + strand, within SMc02224 at 586.025 kb on + strand, within SMc02224 at 586.025 kb on + strand, within SMc02224 at 586.026 kb on - strand, within SMc02224 at 586.027 kb on + strand, within SMc02224 at 586.027 kb on + strand, within SMc02224 at 586.027 kb on + strand, within SMc02224 at 586.027 kb on + strand, within SMc02224 at 586.028 kb on - strand, within SMc02224 at 586.064 kb on + strand, within SMc02224 at 586.076 kb on + strand, within SMc02224
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 583,728 + +0.1 583,729 - +2.3 583,781 - -0.4 583,801 - -0.5 583,801 - -1.1 583,801 - -0.5 584,167 + SMc02222 0.46 -0.7 584,554 - -0.5 584,554 - -0.3 584,616 + +0.9 584,617 - -0.7 584,874 + SMc02223 0.39 -0.6 584,874 + SMc02223 0.39 -0.3 584,875 - SMc02223 0.40 -0.1 584,875 - SMc02223 0.40 +0.3 584,875 - SMc02223 0.40 -0.4 584,875 - SMc02223 0.40 -0.4 585,095 + SMc02223 0.73 -1.1 585,096 - SMc02223 0.73 -0.9 585,096 - SMc02223 0.73 -1.6 585,338 - -0.6 585,383 - -0.6 585,412 + -1.7 585,412 + +1.0 585,464 + -0.1 585,464 + +0.4 585,800 - SMc02224 0.28 +0.5 585,806 + SMc02224 0.28 +0.7 585,806 + SMc02224 0.28 -0.1 585,806 + SMc02224 0.28 +1.0 585,807 - SMc02224 0.29 -0.7 585,807 - SMc02224 0.29 +0.4 585,887 + SMc02224 0.36 -0.2 585,887 + SMc02224 0.36 +0.3 585,887 + SMc02224 0.36 -0.1 585,887 + SMc02224 0.36 +0.7 585,889 + SMc02224 0.36 +0.0 585,912 - SMc02224 0.38 +0.3 585,986 + SMc02224 0.45 +3.3 585,987 - SMc02224 0.45 +0.0 586,025 + SMc02224 0.49 +0.7 586,025 + SMc02224 0.49 -0.2 586,025 + SMc02224 0.49 +0.5 586,026 - SMc02224 0.49 -0.7 586,027 + SMc02224 0.49 +1.6 586,027 + SMc02224 0.49 +1.9 586,027 + SMc02224 0.49 +0.0 586,027 + SMc02224 0.49 -0.2 586,028 - SMc02224 0.49 +0.2 586,064 + SMc02224 0.52 -0.7 586,076 + SMc02224 0.53 +1.1
Or see this region's nucleotide sequence