Strain Fitness in Sinorhizobium meliloti 1021 around SMc01857

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc01858 and SMc01857 are separated by 14 nucleotidesSMc01857 and SMc01856 are separated by 883 nucleotides SMc01858: SMc01858 - S-adenosyl-methyltransferase MraW, at 2,354,886 to 2,355,911 SMc01858 SMc01857: SMc01857 - cell division protein MraZ, at 2,355,926 to 2,356,366 SMc01857 SMc01856: SMc01856 - sarcosine oxidase, at 2,357,250 to 2,358,437 SMc01856 Position (kb) 2355 2356 2357Strain fitness (log2 ratio) -1 0 1 2at 2355.042 kb on - strand, within SMc01858at 2355.928 kb on - strandat 2355.928 kb on - strandat 2356.114 kb on - strand, within SMc01857at 2356.114 kb on - strand, within SMc01857at 2356.258 kb on - strand, within SMc01857at 2356.343 kb on - strandat 2356.611 kb on - strandat 2356.655 kb on + strandat 2357.248 kb on - strandat 2357.251 kb on + strandat 2357.251 kb on + strandat 2357.251 kb on + strandat 2357.251 kb on + strandat 2357.251 kb on + strandat 2357.251 kb on + strandat 2357.252 kb on - strandat 2357.252 kb on - strandat 2357.252 kb on - strandat 2357.252 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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2,355,042 - SMc01858 0.15 +2.6
2,355,928 - +2.1
2,355,928 - +0.7
2,356,114 - SMc01857 0.43 -1.4
2,356,114 - SMc01857 0.43 -0.9
2,356,258 - SMc01857 0.75 +0.4
2,356,343 - -1.3
2,356,611 - +2.1
2,356,655 + -1.2
2,357,248 - +0.4
2,357,251 + -0.2
2,357,251 + -0.4
2,357,251 + -0.2
2,357,251 + -0.6
2,357,251 + +0.1
2,357,251 + -0.2
2,357,252 - +0.6
2,357,252 - +0.2
2,357,252 - +0.1
2,357,252 - +0.0

Or see this region's nucleotide sequence