Strain Fitness in Sinorhizobium meliloti 1021 around SMc01799

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc01797 and SMc01798 are separated by 3 nucleotidesSMc01798 and SMc01799 are separated by 11 nucleotidesSMc01799 and SMc01800 are separated by 199 nucleotides SMc01797: SMc01797 - acetyltransferase, at 1,345,174 to 1,345,824 SMc01797 SMc01798: SMc01798 - hypothetical protein, at 1,345,828 to 1,346,568 SMc01798 SMc01799: SMc01799 - signal peptide protein, at 1,346,580 to 1,346,768 SMc01799 SMc01800: SMc01800 - cytochrome C oxidase assembly transmembrane protein, at 1,346,968 to 1,348,071 SMc01800 Position (kb) 1346 1347Strain fitness (log2 ratio) -2 -1 0 1 2at 1345.654 kb on + strand, within SMc01797at 1345.655 kb on - strand, within SMc01797at 1345.822 kb on + strandat 1345.970 kb on + strand, within SMc01798at 1346.028 kb on - strand, within SMc01798at 1346.133 kb on + strand, within SMc01798at 1346.210 kb on + strand, within SMc01798at 1346.210 kb on + strand, within SMc01798at 1346.210 kb on + strand, within SMc01798at 1346.210 kb on + strand, within SMc01798at 1346.211 kb on - strand, within SMc01798at 1346.372 kb on + strand, within SMc01798at 1346.569 kb on - strandat 1346.662 kb on + strand, within SMc01799at 1346.663 kb on - strand, within SMc01799at 1346.731 kb on + strand, within SMc01799at 1346.785 kb on - strandat 1347.227 kb on - strand, within SMc01800

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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1,345,654 + SMc01797 0.74 -0.4
1,345,655 - SMc01797 0.74 -1.4
1,345,822 + +2.0
1,345,970 + SMc01798 0.19 +0.1
1,346,028 - SMc01798 0.27 -1.0
1,346,133 + SMc01798 0.41 +0.5
1,346,210 + SMc01798 0.52 +1.2
1,346,210 + SMc01798 0.52 -0.5
1,346,210 + SMc01798 0.52 +0.1
1,346,210 + SMc01798 0.52 +0.2
1,346,211 - SMc01798 0.52 -2.4
1,346,372 + SMc01798 0.73 +0.1
1,346,569 - -0.7
1,346,662 + SMc01799 0.43 +0.8
1,346,663 - SMc01799 0.44 -0.6
1,346,731 + SMc01799 0.80 +0.2
1,346,785 - -1.1
1,347,227 - SMc01800 0.23 +0.9

Or see this region's nucleotide sequence